Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008410.1 Corchorus capsularis cultivar CVL-1 contig08431, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4969
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31


Found at i:2951 original size:20 final size:20

Alignment explanation


    Indices: 2912--2951  Score: 55
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       2902 ACACCACATC

                      *         
       2912 ATTACATCATTCAAATTTTG
          1 ATTACATCATCCAAATTTTG

                                 
       2932 ATTACATCA-CCAAATATTTG
          1 ATTACATCATCCAAAT-TTTG

       2952 TATGTTCAAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  19    5  0.28
  20   13  0.72

ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40


Consensus pattern (20 bp):   
ATTACATCATCCAAATTTTG
Done.