Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008417.1 Corchorus capsularis cultivar CVL-1 contig08438, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38945

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1766--1839
33
2.2
33
90
4
114
25
37
25
10
1.88
2663--2861
98
2.0
98
98
0
380
35
17
15
32
1.90
3618--3685
30
2.3
30
100
0
136
13
26
35
25
1.92
6589--6623
7
5.1
7
93
6
63
14
0
42
42
1.45
6589--6623
13
2.6
13
95
4
61
14
0
42
42
1.45
11499--11545
24
2.0
23
84
12
60
34
27
27
10
1.90
16073--16103
2
15.5
2
100
0
62
48
0
0
51
1.00
16551--16590
14
2.8
14
88
3
53
32
0
65
2
1.06
17522--17568
24
1.9
24
86
4
67
63
6
27
2
1.30
23652--23685
17
1.9
18
88
5
52
32
23
23
20
1.98
24872--24979
31
3.5
31
85
2
146
34
26
22
16
1.95
25480--25544
15
4.2
15
76
7
67
52
29
12
6
1.63
25471--25544
16
4.7
16
75
9
71
48
31
13
6
1.68
28539--28585
24
2.0
24
95
0
85
36
0
19
44
1.51
31636--31731
33
2.9
33
79
11
108
14
41
32
11
1.82
31771--31941
32
5.4
32
88
6
235
12
28
43
15
1.83
35074--35121
6
7.8
6
88
2
51
70
25
2
2
1.09
35074--35116
12
3.6
12
90
0
59
74
23
2
0
0.93
35076--35121
18
2.5
18
85
3
65
71
23
2
2
1.08

Tables:   1

The End!