Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008421.1 Corchorus capsularis cultivar CVL-1 contig08442, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34657

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--39
2
19.5
2
100
0
78
51
0
0
48
1.00
2728--2791
29
2.1
31
83
11
80
26
7
23
42
1.81
7412--7475
27
2.4
27
81
0
74
25
25
21
28
1.99
8920--9083
82
2.0
82
97
0
310
27
21
16
34
1.95
14177--14221
24
2.0
22
86
8
63
20
20
20
40
1.92
14369--14407
19
2.1
19
100
0
78
15
25
30
28
1.96
14427--14501
27
2.8
27
70
0
69
10
33
33
22
1.89
14556--14719
28
5.9
26
84
6
157
18
23
29
28
1.98
14540--14727
29
6.7
29
84
6
199
19
22
29
28
1.98
14860--15021
29
5.6
29
81
0
162
22
20
29
28
1.98
15642--15801
28
5.8
28
81
8
202
18
16
23
41
1.89
15784--15823
20
2.0
20
100
0
80
10
15
40
35
1.80
15878--16034
58
2.7
58
86
2
190
15
21
36
26
1.93
19584--19621
17
2.3
17
86
13
53
71
2
2
23
1.12
19615--19655
22
1.9
21
85
5
55
65
2
17
14
1.37
25807--25943
70
2.0
70
100
0
274
27
24
19
27
1.99
26357--26691
34
10.0
34
93
2
556
22
29
20
27
1.98
26361--26691
67
5.0
67
95
1
578
22
29
20
27
1.99
26357--26691
101
3.3
102
92
3
565
22
29
20
27
1.98
33322--34303
201
4.9
201
90
2
1552
33
13
18
34
1.90
33322--34657
394
3.4
396
88
5
1935
32
13
19
34
1.91
34134--34472
173
2.0
173
93
0
588
30
14
20
34
1.92

Tables:   1

The End!