Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008423.1 Corchorus capsularis cultivar CVL-1 contig08444, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6542
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35


Found at i:2814 original size:3 final size:3

Alignment explanation


    Indices: 2795--2831  Score: 58
    Period size: 3  Copynumber: 12.7  Consensus size: 3

       2785 ATATATAAAG

                      *                                       
       2795 TAA TAA TAG TAA T-A TAA TAA TAA TAA TAA TAA TAA TA
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA

       2832 TTTGATAACA


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
   2    2  0.06
   3   29  0.94

ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35


Consensus pattern (3 bp):   
TAA

Found at i:4065 original size:2 final size:2

Alignment explanation


    Indices: 4058--4086  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       4048 CAAATAATCA

                                                       
       4058 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       4087 CACACACATA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.