Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008433.1 Corchorus capsularis cultivar CVL-1 contig08454, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3887
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.27


Found at i:571 original size:6 final size:6

Alignment explanation


    Indices: 560--584  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        550 CTAATAGAGC

                                         
        560 AGAACA AGAACA AGAACA AGAACA A
          1 AGAACA AGAACA AGAACA AGAACA A

        585 CATCATGCAG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.68, C:0.16, G:0.16, T:0.00


Consensus pattern (6 bp):   
AGAACA

Found at i:3829 original size:2 final size:2

Alignment explanation


    Indices: 3822--3849  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

       3812 TGTATTCCTT

                                                     
       3822 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       3850 GATTCATTAG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.