Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000844.1 Corchorus capsularis cultivar CVL-1 contig00844, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3001
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--33  Score: 50
    Period size: 2  Copynumber: 17.0  Consensus size: 2

                                                   *          
          1 GA GA GA GA GA GA GA GA GA GA GA GA -A AA GA GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

         34 AAATAACTTA


Statistics
Matches: 29,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   28  0.97

ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00


Consensus pattern (2 bp):   
GA

Found at i:2910 original size:2 final size:2

Alignment explanation


    Indices: 2903--2932  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

       2893 GGCGTGTCCA

                                                        
       2903 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       2933 GTATGTATGT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.