Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008442.1 Corchorus capsularis cultivar CVL-1 contig08463, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24104
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36


Found at i:1586 original size:13 final size:13

Alignment explanation


    Indices: 1568--1592  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1558 ATTTATATTT

                         
       1568 CTTAATATTTCTC
          1 CTTAATATTTCTC

                        
       1581 CTTAATATTTCT
          1 CTTAATATTTCT

       1593 TATTGGCTTC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.24, C:0.20, G:0.00, T:0.56


Consensus pattern (13 bp):   
CTTAATATTTCTC
Done.