Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008443.1 Corchorus capsularis cultivar CVL-1 contig08464, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35495

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
390--417
2
14.0
2
100
0
56
50
0
0
50
1.00
1980--2032
27
2.0
27
85
7
74
39
9
1
49
1.46
3594--4364
386
2.0
384
95
1
1400
42
14
12
30
1.83
5133--5465
180
1.9
180
96
0
621
27
14
18
39
1.89
6171--6236
2
34.0
2
90
6
64
39
0
9
51
1.34
6234--6268
4
8.8
4
100
0
70
25
0
22
51
1.48
8850--8905
27
2.1
27
96
0
103
37
14
26
21
1.92
10702--10733
13
2.3
15
89
10
50
9
12
6
71
1.29
12795--12842
22
2.3
20
86
10
62
41
25
14
18
1.88
12762--12864
53
1.9
53
86
0
143
37
28
18
15
1.91
12812--12911
31
3.2
31
80
2
94
34
28
20
18
1.95
20540--20572
2
16.5
2
93
0
57
48
3
0
48
1.17
23334--23426
45
2.1
45
100
0
186
21
25
7
45
1.78
24502--24567
33
2.0
33
96
0
123
33
10
6
50
1.62

Tables:   1

The End!