Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008444.1 Corchorus capsularis cultivar CVL-1 contig08465, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12583

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9390--9427
19
2.0
19
100
0
76
94
5
0
0
0.30
9389--9426
20
1.9
20
100
0
76
97
2
0
0
0.18
9389--9426
1
38.0
1
94
0
67
97
2
0
0
0.18
11341--11538
39
5.2
38
77
10
183
48
7
16
27
1.72
11304--11538
38
6.2
38
76
12
191
48
7
17
26
1.72
11304--11510
78
2.7
76
81
11
240
50
7
16
26
1.71
11543--11618
33
2.3
33
95
4
136
57
2
23
15
1.51
11561--11617
17
3.4
17
72
13
64
57
1
24
15
1.48
11565--11617
16
3.2
16
70
15
54
58
1
24
15
1.47
11605--11645
22
1.9
22
90
5
66
63
0
17
19
1.31
11656--11714
15
4.0
15
74
26
63
52
6
23
16
1.68
11653--11748
16
6.2
16
74
20
80
54
5
22
17
1.63
11688--11769
32
2.5
33
82
11
105
56
3
23
17
1.57
11687--11751
16
4.1
16
82
7
87
56
4
21
16
1.58
11687--11769
16
5.1
15
75
17
51
56
3
22
16
1.56
11847--11911
32
2.0
32
85
5
87
44
6
18
30
1.74
12004--12045
21
2.0
20
90
4
66
57
4
19
19
1.58
12004--12105
21
4.9
21
70
21
63
54
3
20
20
1.60
12020--12105
14
6.3
13
73
16
59
54
3
20
20
1.59
12226--12255
15
2.0
15
93
0
51
63
0
16
20
1.31

Tables:   1

The End!