Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008445.1 Corchorus capsularis cultivar CVL-1 contig08466, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35152

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--205
38
5.2
38
81
8
226
48
6
19
25
1.73
213--299
32
2.7
32
90
3
129
55
4
19
20
1.61
546--580
14
2.5
14
90
0
61
57
5
17
20
1.60
670--762
26
3.6
25
81
11
100
50
2
24
22
1.60
670--762
25
3.6
26
82
8
102
50
2
24
22
1.60
744--773
15
2.0
15
93
0
51
63
0
16
20
1.31
744--789
24
1.9
24
90
0
74
60
2
19
17
1.46
1728--2135
55
7.4
55
96
0
746
49
7
17
25
1.72
2436--2763
22
14.9
20
71
18
164
54
6
19
19
1.66
2428--2719
42
6.6
42
77
14
227
54
5
20
19
1.64
2431--2719
85
3.3
87
78
11
252
54
5
20
19
1.64
2506--2697
43
4.5
43
79
9
135
54
6
20
18
1.65
8044--8098
29
1.9
29
85
3
76
52
1
5
40
1.35
10376--10593
27
7.8
27
76
12
154
18
24
2
54
1.56
10382--10599
113
1.9
114
83
3
280
18
23
2
55
1.55
10433--10598
27
6.0
27
80
9
165
19
21
3
56
1.56
10583--10625
21
2.0
21
81
0
50
25
20
2
51
1.60
10589--10764
36
4.9
36
90
0
264
20
23
2
53
1.56
10724--10778
15
3.7
15
76
13
60
21
20
1
56
1.51
10631--10764
7
18.7
7
69
13
76
19
22
2
55
1.57
10807--10887
40
2.0
40
88
4
119
20
24
3
50
1.64
10810--10901
40
2.3
40
81
7
107
22
23
3
50
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10828--11009
72
2.6
70
79
3
204
19
23
3
53
1.60
10965--11065
41
2.5
40
79
3
112
21
20
3
53
1.62
11057--11413
32
11.3
32
82
4
352
18
22
3
54
1.59
11056--11413
64
5.7
64
82
5
390
18
22
3
54
1.60
11059--11413
127
2.8
130
82
7
408
18
22
3
54
1.60
14205--14271
34
2.0
33
85
5
91
47
13
8
29
1.73
14674--14841
45
3.7
45
91
0
264
33
17
22
27
1.96
15998--16034
16
2.4
16
83
16
51
0
29
0
70
0.88
16670--16698
14
2.1
14
93
6
51
0
13
0
86
0.58
17345--17398
14
3.8
14
80
7
56
35
11
7
46
1.67
24573--24602
14
2.1
14
93
0
51
50
20
6
23
1.71
24915--24960
21
2.1
22
92
4
76
54
0
4
41
1.20
25431--25463
4
8.8
4
87
12
52
24
0
0
75
0.80
30427--30458
1
32.0
1
93
0
55
96
0
0
3
0.20
34467--34492
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!