Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008447.1 Corchorus capsularis cultivar CVL-1 contig08468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76403

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1154--1210
30
1.9
30
96
0
105
63
17
3
15
1.45
22431--22546
33
3.6
31
84
7
119
40
18
9
31
1.82
22582--22690
33
3.3
33
82
5
157
42
21
11
24
1.86
22557--22699
66
2.2
66
96
0
232
41
20
10
27
1.84
24187--24220
8
4.1
8
85
7
50
23
2
14
58
1.50
26356--26396
20
2.0
20
86
9
57
14
29
36
19
1.92
29646--29710
30
2.2
30
88
5
96
10
26
40
23
1.87
44208--44280
35
2.1
35
89
0
110
46
10
4
38
1.58
46082--46106
12
2.1
12
100
0
50
24
32
28
16
1.96
46117--46345
77
3.0
77
95
0
395
28
24
18
27
1.98
51164--51189
7
3.7
7
100
0
52
0
30
0
69
0.89
56602--56644
2
21.5
2
95
0
77
46
0
2
51
1.13
56790--56823
16
2.1
16
88
0
50
11
17
35
35
1.87
57056--57137
42
2.0
42
92
0
137
37
6
17
39
1.74
57686--57794
16
6.9
15
73
14
78
11
22
36
29
1.90
57686--57810
32
4.0
31
84
6
146
12
22
35
30
1.90
57686--57830
32
4.6
32
84
5
143
12
21
35
30
1.90
60285--60346
32
1.9
32
93
0
106
22
12
14
50
1.77
60191--60576
194
2.0
192
94
1
673
23
15
12
48
1.78
65926--65999
30
2.5
30
90
0
112
27
16
33
22
1.95
67116--67218
52
2.0
52
92
0
170
26
24
23
26
2.00
69480--69584
33
3.2
32
81
5
120
45
21
7
24
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70165--70214
25
1.9
26
88
8
75
70
2
6
22
1.20
70189--70254
24
2.8
23
77
11
62
63
3
10
22
1.40
70209--70255
24
2.0
24
87
8
69
57
4
12
25
1.54
70342--70406
17
4.2
17
81
16
72
58
3
7
30
1.42
70354--70406
27
2.0
27
85
7
72
60
3
7
28
1.41
70451--70493
22
2.0
21
90
4
68
62
0
11
25
1.29
72130--72263
54
2.5
54
85
4
164
35
23
14
26
1.93
72226--72673
35
12.8
35
87
3
577
31
18
18
31
1.95
73617--73668
11
4.5
11
81
11
59
0
13
3
82
0.80
73617--73668
24
2.2
24
90
10
81
0
13
3
82
0.80
75506--75576
24
2.8
26
78
6
65
22
5
9
61
1.48

Tables:   1

The End!