Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008449.1 Corchorus capsularis cultivar CVL-1 contig08470, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2617
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:383 original size:27 final size:27

Alignment explanation


    Indices: 330--383  Score: 63
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        320 GGGTATTTTG

                            **    *    
        330 GTCATTTTTAAGTTCAGGGGCATTTTA
          1 GTCATTTTTAAGTTCACCGGCAATTTA

                              **       
        357 GTCATTTTTAAGTTCACCTTCAATTTA
          1 GTCATTTTTAAGTTCACCGGCAATTTA

        384 TATTAGCTAA


Statistics
Matches: 22,  Mismatches: 5, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  27   22  1.00

ACGTcount: A:0.24, C:0.15, G:0.15, T:0.46


Consensus pattern (27 bp):   
GTCATTTTTAAGTTCACCGGCAATTTA
Done.