Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008450.1 Corchorus capsularis cultivar CVL-1 contig08471, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43480

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14--55
20
2.2
20
83
12
52
59
0
19
21
1.38
165--195
15
2.1
15
93
0
53
64
0
16
19
1.29
789--824
19
1.9
18
88
5
54
33
22
2
41
1.68
2414--2456
21
2.1
20
83
12
52
58
9
6
25
1.54
5071--5110
20
2.0
20
85
9
55
57
12
17
12
1.65
5390--5434
16
2.8
16
82
3
54
55
11
4
28
1.54
9070--9102
5
6.6
5
96
0
57
57
21
18
3
1.53
9632--9662
11
2.7
11
95
5
53
77
0
0
22
0.77
9777--9805
14
2.1
14
100
0
58
34
13
13
37
1.85
19972--19997
13
2.0
13
100
0
52
30
23
7
38
1.83
20211--20302
46
2.0
44
87
4
130
40
9
4
45
1.57
21525--21580
5
10.4
5
78
21
60
58
0
1
39
1.08
21525--21580
22
2.5
23
85
8
80
58
0
1
39
1.08
21521--21587
17
4.4
16
76
18
63
53
0
5
40
1.25
30918--31023
6
16.2
6
69
23
54
33
44
17
3
1.67
30919--30981
23
2.5
24
85
10
74
31
46
19
3
1.65
30956--31013
16
3.7
16
93
4
100
39
39
15
5
1.70
32077--32116
18
2.1
19
90
9
64
55
5
0
40
1.22
41344--41453
16
6.9
16
71
15
84
34
37
18
10
1.84
41351--41453
32
3.2
31
82
5
125
35
36
17
9
1.83
42723--42803
42
1.9
42
97
0
153
38
18
4
38
1.73
42975--43144
16
10.9
15
76
11
123
34
40
18
6
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42974--43144
32
5.5
32
78
10
178
34
39
19
6
1.77
42982--43146
48
3.6
47
77
10
178
34
39
20
6
1.77

Tables:   1

The End!