genome.fa.s8455.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008455.1 Corchorus capsularis cultivar CVL-1 contig08476, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53969

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1994--2036	20	2.2	20	86	0	59	25	11	20	41	1.86
2678--2736	30	1.9	31	89	3	93	32	20	3	44	1.68
2678--2743	30	2.1	31	86	5	89	33	18	4	43	1.70
2746--2784	19	2.1	19	85	0	51	43	2	0	53	1.14
3979--4078	44	2.3	43	84	6	130	36	14	17	33	1.89
3948--4123	22	7.9	23	73	13	100	34	10	17	38	1.83
4166--4304	22	6.4	22	76	13	128	37	6	18	37	1.77
4329--4420	22	4.6	20	66	21	57	41	9	16	32	1.81
4404--4573	22	7.8	21	74	7	92	41	10	13	35	1.78
4404--4573	44	3.9	43	75	7	148	41	10	13	35	1.78
4402--4548	66	2.2	66	81	2	170	40	10	14	34	1.80
4674--4930	22	11.7	22	70	9	130	42	8	11	37	1.73
4676--4932	44	5.8	44	68	13	154	42	8	11	37	1.73
7340--7387	16	3.0	17	82	8	57	39	0	0	60	0.97
8772--8829	6	9.7	6	81	7	64	15	36	31	17	1.91
9121--9491	185	2.0	185	91	1	600	27	22	20	29	1.98
9477--9557	40	2.0	40	87	0	117	29	18	18	33	1.95
9872--9952	40	2.0	40	87	0	117	29	18	18	33	1.95
9327--10333	381	2.6	384	92	2	1615	28	27	18	26	1.98
10257--10333	40	1.9	40	94	0	136	31	20	15	32	1.94
10648--10690	6	7.2	6	83	0	50	16	32	32	18	1.93
16523--16951	50	8.7	50	91	0	596	23	26	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19569--19601	16	2.1	16	88	5	50	30	54	15	0	1.41
19643--19748	16	6.6	16	76	11	92	34	34	19	10	1.86
19645--19748	32	3.2	32	86	5	122	34	35	19	10	1.86
21770--21851	42	2.0	42	95	0	146	39	19	4	36	1.73
22095--22205	32	3.5	31	75	6	98	36	34	18	10	1.86
22077--22205	16	8.1	16	72	10	86	34	34	20	10	1.87
22092--22205	48	2.4	47	79	4	131	35	33	19	11	1.87
23381--23458	28	2.6	28	80	8	84	26	19	16	37	1.93
24803--24927	47	2.7	47	93	0	205	26	41	19	12	1.87
24953--25100	74	2.0	74	94	0	260	25	38	20	15	1.92
24982--25100	34	3.3	34	67	21	98	26	39	19	14	1.90
25080--25205	43	3.1	43	66	25	119	23	34	22	20	1.97
25089--25213	44	3.1	44	66	25	128	22	36	20	20	1.95
24982--25213	78	3.0	78	86	5	287	24	37	20	17	1.93
25208--25324	43	2.6	47	86	10	197	21	41	24	11	1.87
29779--29827	25	2.0	25	87	0	71	30	20	12	36	1.89
30859--30917	20	3.0	20	78	12	68	54	6	0	38	1.27
33210--33250	2	21.0	2	80	14	50	43	2	0	53	1.13
33964--34093	60	2.2	59	80	4	145	42	9	18	30	1.81
37285--37335	15	3.6	15	69	15	54	33	11	0	54	1.37
37385--37469	37	2.3	37	85	4	118	16	21	10	51	1.74
37700--37728	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48564--49501	199	4.7	202	85	4	1213	35	17	13	34	1.88

Tables:   1

The End!