Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01008458.1 Corchorus capsularis cultivar CVL-1 contig08479, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 109319
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:563 original size:2 final size:2
Alignment explanation
Indices: 556--618 Score: 67
Period size: 2 Copynumber: 31.0 Consensus size: 2
546 ATTGTTTTAA
* *
556 AT AT AT AT AT AT AT GAT AT A- AG AT AT A- AG AT AT AT AT AT AT
1 AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT
597 AT AT AT AT GAT AT AT AT GAT AT
1 AT AT AT AT -AT AT AT AT -AT AT
619 TAACATATTT
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
1 2 0.04
2 46 0.85
3 6 0.11
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (2 bp):
AT
Found at i:589 original size:21 final size:21
Alignment explanation
Indices: 562--618 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
552 TTAAATATAT
562 ATATATATGATATAAGATATAAG
1 ATATATAT-ATAT-AGATATAAG
* *
585 ATATATATATATATATATATG
1 ATATATATATATAGATATAAG
606 ATATATATGATAT
1 ATATATAT-ATAT
619 TAACATATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 15 0.48
22 8 0.26
23 8 0.26
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (21 bp):
ATATATATATATAGATATAAG
Found at i:7505 original size:15 final size:15
Alignment explanation
Indices: 7472--7511 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
7462 CATACCCACC
*
7472 AAAATGAAAAGAAAA
1 AAAATGAAAAAAAAA
*
7487 AAAATTAAAAAAAAA
1 AAAATGAAAAAAAAA
*
7502 AAAAGGAAAA
1 AAAATGAAAA
7512 CAAATTTACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.07
Consensus pattern (15 bp):
AAAATGAAAAAAAAA
Found at i:7653 original size:44 final size:44
Alignment explanation
Indices: 7590--7677 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
7580 GGAGCCATGT
7590 CAAATAAGGGTTACTTGTCTTACATTAATCTAACAACAAACTCG
1 CAAATAAGGGTTACTTGTCTTACATTAATCTAACAACAAACTCG
7634 CAAATAAGGGTTACTTGTCTTACATTAATCTAACAACAAACTCG
1 CAAATAAGGGTTACTTGTCTTACATTAATCTAACAACAAACTCG
7678 AACAAACTCG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (44 bp):
CAAATAAGGGTTACTTGTCTTACATTAATCTAACAACAAACTCG
Found at i:8096 original size:6 final size:6
Alignment explanation
Indices: 8085--8142 Score: 80
Period size: 6 Copynumber: 9.7 Consensus size: 6
8075 TCCCTACTCT
* * * *
8085 CGAGTC CGAGTC CGAGTT CGAGTC CAAGTC GGGGTC CGAGTC CGAGTC
1 CGAGTC CGAGTC CGAGTC CGAGTC CGAGTC CGAGTC CGAGTC CGAGTC
8133 CGAGTC CGAG
1 CGAGTC CGAG
8143 AAGAAATTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.17, C:0.29, G:0.36, T:0.17
Consensus pattern (6 bp):
CGAGTC
Found at i:12323 original size:6 final size:6
Alignment explanation
Indices: 12312--12365 Score: 65
Period size: 6 Copynumber: 9.2 Consensus size: 6
12302 TCCCTACTCT
* * * *
12312 CGAGTC CGAGTC CGAGTC CAAGT- CGGGTC CGGGTC CGAGTC CAAGTC
1 CGAGTC CGAGTC CGAGTC CGAGTC CGAGTC CGAGTC CGAGTC CGAGTC
12359 CGAGTC C
1 CGAGTC C
12366 CAGAAGAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
5 3 0.07
6 38 0.93
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (6 bp):
CGAGTC
Found at i:12347 original size:23 final size:23
Alignment explanation
Indices: 12315--12358 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
12305 CTACTCTCGA
12315 GTCCGAGTCCGAGTCCAAGTCGG
1 GTCCGAGTCCGAGTCCAAGTCGG
*
12338 GTCCGGGTCCGAGTCCAAGTC
1 GTCCGAGTCCGAGTCCAAGTC
12359 CGAGTCCCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (23 bp):
GTCCGAGTCCGAGTCCAAGTCGG
Found at i:14956 original size:18 final size:18
Alignment explanation
Indices: 14933--14976 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
14923 GTTTATCATC
* **
14933 AGCATGGTTCATCGTACA
1 AGCATGGCTCATCACACA
14951 AGCATGGCTCATCACACA
1 AGCATGGCTCATCACACA
14969 AGCATGGC
1 AGCATGGC
14977 ATATCCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (18 bp):
AGCATGGCTCATCACACA
Found at i:17382 original size:21 final size:21
Alignment explanation
Indices: 17356--17400 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
17346 CAAGCCATCT
17356 CAAATCCCTCAGATCAAAAGG
1 CAAATCCCTCAGATCAAAAGG
17377 CAAATCCCTCAGATCAAAAGG
1 CAAATCCCTCAGATCAAAAGG
17398 CAA
1 CAA
17401 TTGGATAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.44, C:0.29, G:0.13, T:0.13
Consensus pattern (21 bp):
CAAATCCCTCAGATCAAAAGG
Found at i:24108 original size:19 final size:19
Alignment explanation
Indices: 24084--24122 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
24074 TTCTAAAAGC
24084 TGTTGGAAAATGATTTAGT
1 TGTTGGAAAATGATTTAGT
24103 TGTTGGAAAATGATTTAGT
1 TGTTGGAAAATGATTTAGT
24122 T
1 T
24123 AAATGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.44
Consensus pattern (19 bp):
TGTTGGAAAATGATTTAGT
Found at i:24130 original size:19 final size:19
Alignment explanation
Indices: 24087--24134 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
24077 TAAAAGCTGT
**
24087 TGGAAAATGATTTAGTTGT
1 TGGAAAATGATTTAGTTAA
24106 TGGAAAATGATTTAGTTAAA
1 TGGAAAATGATTTAGTT-AA
*
24126 TGAAAAATG
1 TGGAAAATG
24135 TGGGATATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (19 bp):
TGGAAAATGATTTAGTTAA
Found at i:25807 original size:26 final size:23
Alignment explanation
Indices: 25787--25836 Score: 72
Period size: 20 Copynumber: 2.3 Consensus size: 23
25777 GATGACAAAC
25787 ATAGACATTTGAATATTATG---
1 ATAGACATTTGAATATTATGACA
25807 ATAGACATTTGAATATTATGAC-
1 ATAGACATTTGAATATTATGACA
25829 ATAGACAT
1 ATAGACAT
25837 CATGTTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 20 0.71
22 8 0.29
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (23 bp):
ATAGACATTTGAATATTATGACA
Found at i:25812 original size:20 final size:20
Alignment explanation
Indices: 25787--25827 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
25777 GATGACAAAC
25787 ATAGACATTTGAATATTATG
1 ATAGACATTTGAATATTATG
25807 ATAGACATTTGAATATTATG
1 ATAGACATTTGAATATTATG
25827 A
1 A
25828 CATAGACATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.39
Consensus pattern (20 bp):
ATAGACATTTGAATATTATG
Found at i:26243 original size:31 final size:30
Alignment explanation
Indices: 26205--26331 Score: 108
Period size: 31 Copynumber: 4.4 Consensus size: 30
26195 TCCGACGTGA
*
26205 CACGCCACGTGTACCAAAAAGTGACATTTGG
1 CACGCCACATGTACCAAAAAGTGACA-TTGG
26236 CACGCCACATGTACCAAAAAGT--C----G
1 CACGCCACATGTACCAAAAAGTGACATTGG
* * *
26260 --TGCCACATGTACCAAAAAGTGACACATGT
1 CACGCCACATGTACCAAAAAGTGACA-TTGG
*
26289 CACGCCACGTGTACCAAAAAGTGACATGTGG
1 CACGCCACATGTACCAAAAAGTGACAT-TGG
* *
26320 CATGCCATATGT
1 CACGCCACATGT
26332 TTCAAAAAAT
Statistics
Matches: 76, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
22 19 0.25
24 2 0.03
29 1 0.01
31 54 0.71
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (30 bp):
CACGCCACATGTACCAAAAAGTGACATTGG
Found at i:26287 original size:19 final size:20
Alignment explanation
Indices: 26241--26288 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 20
26231 TTTGGCACGC
*
26241 CACATGTACCAAAAAGTCGTGC
1 CACATGTACCAAAAA--CGTGA
26263 CACATGTACCAAAAA-GTGA
1 CACATGTACCAAAAACGTGA
26282 CACATGT
1 CACATGT
26289 CACGCCACGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 10 0.40
22 15 0.60
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CACATGTACCAAAAACGTGA
Found at i:26293 original size:53 final size:53
Alignment explanation
Indices: 26208--26310 Score: 161
Period size: 53 Copynumber: 1.9 Consensus size: 53
26198 GACGTGACAC
* **
26208 GCCACGTGTACCAAAAAGTGACATTTGGCACGCCACATGTACCAAAAAGTCGT
1 GCCACATGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGTCGT
* *
26261 GCCACATGTACCAAAAAGTGACACATGTCACGCCACGTGTACCAAAAAGT
1 GCCACATGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGT
26311 GACATGTGGC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.36, C:0.27, G:0.19, T:0.17
Consensus pattern (53 bp):
GCCACATGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGTCGT
Found at i:26802 original size:22 final size:22
Alignment explanation
Indices: 26776--26821 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
26766 AAGTAGATTT
26776 ATTCTAATTGTAACGAGATTCA
1 ATTCTAATTGTAACGAGATTCA
26798 ATTCTAATTGTAACGAGATTCA
1 ATTCTAATTGTAACGAGATTCA
26820 AT
1 AT
26822 GGTAACACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (22 bp):
ATTCTAATTGTAACGAGATTCA
Found at i:33005 original size:6 final size:6
Alignment explanation
Indices: 32994--33051 Score: 80
Period size: 6 Copynumber: 9.7 Consensus size: 6
32984 TAAATTTCTT
* * * *
32994 CTCGGA CTCGGA CTCGGA CTCGGA CCCCGA CTTGGA CTCGAA CTCGGA
1 CTCGGA CTCGGA CTCGGA CTCGGA CTCGGA CTCGGA CTCGGA CTCGGA
33042 CTCGGA CTCG
1 CTCGGA CTCG
33052 AGAGTAGGGA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.17, C:0.36, G:0.29, T:0.17
Consensus pattern (6 bp):
CTCGGA
Found at i:33972 original size:27 final size:27
Alignment explanation
Indices: 33942--33993 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
33932 TTTTGGTGTA
* *
33942 GTTTAGTGTTGTTAAGGAGTAGGAATC
1 GTTTAGTGATGTAAAGGAGTAGGAATC
*
33969 GTTTGGTGATGTAAAGGAGTAGGAA
1 GTTTAGTGATGTAAAGGAGTAGGAA
33994 AAGTTGAGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.29, C:0.02, G:0.37, T:0.33
Consensus pattern (27 bp):
GTTTAGTGATGTAAAGGAGTAGGAATC
Found at i:35474 original size:136 final size:135
Alignment explanation
Indices: 35162--35571 Score: 723
Period size: 136 Copynumber: 3.0 Consensus size: 135
35152 TATTTTGAGT
* * *
35162 TAATGGTTTAGTTTTATAACTCTTTTAATTAAGTGTTAATTAATGGTTTGTAAAAAAATACTAAA
1 TAATGGTTTGGTTTTATAACTCTTTTAATTAAGTGTTAAATAATGGTTTGTAAAAAATTACTAAA
*
35227 AC-GGGCGGATAACGTCTCACCAGATTAAAAGTTGGAAGGACTGTTAAGTAATTTCACGTTGCTA
66 ACGGGGC-GATAAGGTCTCACCAGATTAAAAGTTGGAAGGACTGTTAAGTAATTTCACGTTGCTA
35291 CAAAAA
130 CAAAAA
35297 TAATGGTTTGGTTTTATAACTCTTTTAATTAAGTGTTAAATAATGGTTTGTAAAAAATTACTAAA
1 TAATGGTTTGGTTTTATAACTCTTTTAATTAAGTGTTAAATAATGGTTTGTAAAAAATTACTAAA
*
35362 ACGGGGCGATAAGGTCTCACCAGATTAAAAGTTGGAAGGATTGTTAAGTAATTTCACGTTGCTAC
66 ACGGGGCGATAAGGTCTCACCAGATTAAAAGTTGGAAGGACTGTTAAGTAATTTCACGTTGCTAC
35427 AAAAAA
131 -AAAAA
*
35433 TAATGGTTTGGTTTTATAACTCTTTTAATTAAGTGTTAAATAATAGTTTGTAAAAAATTACTAAA
1 TAATGGTTTGGTTTTATAACTCTTTTAATTAAGTGTTAAATAATGGTTTGTAAAAAATTACTAAA
* *
35498 ACGGGGCGATAAGGTCCCATCAGATTAAAAGTTGGAAGGACTGTTAAGTAATTTCACGTTGCTAC
66 ACGGGGCGATAAGGTCTCACCAGATTAAAAGTTGGAAGGACTGTTAAGTAATTTCACGTTGCTAC
35563 AAAAA
131 AAAAA
35568 TAAT
1 TAAT
35572 ATGTAGTATA
Statistics
Matches: 264, Mismatches: 9, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
135 129 0.49
136 135 0.51
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.34
Consensus pattern (135 bp):
TAATGGTTTGGTTTTATAACTCTTTTAATTAAGTGTTAAATAATGGTTTGTAAAAAATTACTAAA
ACGGGGCGATAAGGTCTCACCAGATTAAAAGTTGGAAGGACTGTTAAGTAATTTCACGTTGCTAC
AAAAA
Found at i:43945 original size:16 final size:17
Alignment explanation
Indices: 43912--43945 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
43902 CGGGCCATTT
43912 TCGGATTCGGGCTTGAA
1 TCGGATTCGGGCTTGAA
43929 TCGGATTCGGG-TTGAA
1 TCGGATTCGGGCTTGAA
43945 T
1 T
43946 TTTGGTCAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.18, C:0.15, G:0.35, T:0.32
Consensus pattern (17 bp):
TCGGATTCGGGCTTGAA
Found at i:43957 original size:16 final size:15
Alignment explanation
Indices: 43938--43998 Score: 52
Period size: 15 Copynumber: 3.9 Consensus size: 15
43928 ATCGGATTCG
*
43938 GGTTGAATTTTGGTCA
1 GGTT-AATTTGGGTCA
*
43954 GGTTAATTCGGGTTC-
1 GGTTAATTTGGG-TCA
43969 GAGTTGAATTTGGGTCA
1 G-GTT-AATTTGGGTCA
*
43986 GGTTAATTCGGGT
1 GGTTAATTTGGGT
43999 TCGGGTTCAG
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
15 15 0.41
16 14 0.38
17 8 0.22
ACGTcount: A:0.18, C:0.08, G:0.34, T:0.39
Consensus pattern (15 bp):
GGTTAATTTGGGTCA
Found at i:43975 original size:32 final size:32
Alignment explanation
Indices: 43929--44015 Score: 120
Period size: 32 Copynumber: 2.7 Consensus size: 32
43919 CGGGCTTGAA
* * *
43929 TCGGATTCGGGTTGAATTTTGGTCAGGTTAAT
1 TCGGGTTCGAGTTGAATTTGGGTCAGGTTAAT
43961 TCGGGTTCGAGTTGAATTTGGGTCAGGTTAAT
1 TCGGGTTCGAGTTGAATTTGGGTCAGGTTAAT
* * *
43993 TCGGGTTCGGGTTCAGTTTGGGT
1 TCGGGTTCGAGTTGAATTTGGGT
44016 TTTGGCCAGA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.15, C:0.10, G:0.36, T:0.39
Consensus pattern (32 bp):
TCGGGTTCGAGTTGAATTTGGGTCAGGTTAAT
Found at i:43998 original size:15 final size:15
Alignment explanation
Indices: 43949--43998 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
43939 GTTGAATTTT
43949 GGTCAGGTTAATTCG
1 GGTCAGGTTAATTCG
*
43964 GGTTC-GAGTTGAATTTG
1 GG-TCAG-GTT-AATTCG
43981 GGTCAGGTTAATTCG
1 GGTCAGGTTAATTCG
43996 GGT
1 GGT
43999 TCGGGTTCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 11 0.38
16 10 0.34
17 8 0.28
ACGTcount: A:0.18, C:0.10, G:0.36, T:0.36
Consensus pattern (15 bp):
GGTCAGGTTAATTCG
Found at i:44174 original size:16 final size:16
Alignment explanation
Indices: 44153--44211 Score: 64
Period size: 16 Copynumber: 3.7 Consensus size: 16
44143 TTTTCATAAA
*
44153 TTTTCGGATTCGGGTT
1 TTTTCGGATTCGAGTT
* ** *
44169 TTTTCGGGTTTTAGCT
1 TTTTCGGATTCGAGTT
*
44185 TTTTCGGGTTCGAGTT
1 TTTTCGGATTCGAGTT
44201 TTTTCGGATTC
1 TTTTCGGATTC
44212 AGGTTCAGAC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.07, C:0.14, G:0.27, T:0.53
Consensus pattern (16 bp):
TTTTCGGATTCGAGTT
Found at i:45480 original size:65 final size:65
Alignment explanation
Indices: 45393--45515 Score: 167
Period size: 65 Copynumber: 1.9 Consensus size: 65
45383 TAAGTTCAAG
* * *
45393 ATTATACACTAAAAATGGAAAGCTAGATCTTTGAATTGTCCT-AGGGATTTTCTTGCATTGATGT
1 ATTATACACTAAAAAGGGAAAGCTAGATCTTTGAATTAT-CTAAGGGATGTTCTTGCATTGATGT
45457 T
65 T
* * * *
45458 ATTATACATTCAAAAGGGAAAGCTGGATGTTTGAATTATCTAAGGGATGTTCTTGCAT
1 ATTATACACTAAAAAGGGAAAGCTAGATCTTTGAATTATCTAAGGGATGTTCTTGCAT
45516 CGTTGTTAGT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
64 2 0.04
65 48 0.96
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (65 bp):
ATTATACACTAAAAAGGGAAAGCTAGATCTTTGAATTATCTAAGGGATGTTCTTGCATTGATGTT
Found at i:58277 original size:53 final size:53
Alignment explanation
Indices: 58210--58333 Score: 142
Period size: 53 Copynumber: 2.3 Consensus size: 53
58200 GAGACCATCG
* * * * *
58210 TTCTTCATGTAGGAGATCAGCGGTG-TTTTCGAATTTATCACGTGGGACTCTCA
1 TTCTTCATGTAGGAGATCAGCAGTGCGTAT-AAATATATCACGTGGGACTCTCA
* * * *
58263 TTCTTCATGGAGGAGATCGGCAGTGCGTATAAATATATCATGTGGGACTCTCG
1 TTCTTCATGTAGGAGATCAGCAGTGCGTATAAATATATCACGTGGGACTCTCA
*
58316 TTCTTCATATAGGAGATC
1 TTCTTCATGTAGGAGATC
58334 GGCGATTTTC
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 57 0.97
54 2 0.03
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (53 bp):
TTCTTCATGTAGGAGATCAGCAGTGCGTATAAATATATCACGTGGGACTCTCA
Found at i:58998 original size:38 final size:38
Alignment explanation
Indices: 58902--59015 Score: 185
Period size: 38 Copynumber: 3.0 Consensus size: 38
58892 TGGCGCTCTT
* *
58902 CCATCCCAACGAGGGAGTCTCTTGGCAAGACGAACATG
1 CCATTCCAACGAGGGAGTCTCTTGGCGAGACGAACATG
* *
58940 -CATTTCGACGAGGGAGTCTCTTGGCGAGACGAACATG
1 CCATTCCAACGAGGGAGTCTCTTGGCGAGACGAACATG
58977 CCATTCCAACGAGGGAGTCTCTTGGCGAGACGAACATG
1 CCATTCCAACGAGGGAGTCTCTTGGCGAGACGAACATG
59015 C
1 C
59016 ACTCTTGGCG
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
37 33 0.48
38 36 0.52
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.18
Consensus pattern (38 bp):
CCATTCCAACGAGGGAGTCTCTTGGCGAGACGAACATG
Found at i:59053 original size:91 final size:91
Alignment explanation
Indices: 58947--59354 Score: 321
Period size: 91 Copynumber: 4.6 Consensus size: 91
58937 ATGCATTTCG
**
58947 ACGAGGGAGTCTCTTGGCGAGACGAACATGCCATTCCAACGAGGGAGTCTCTTGGCGAGACGAAC
1 ACGAGGG-GTCTCTTGGCGAGACGAACATGCCATTCCAACGAGGGAGTCTCTTGGAAAGACGAAC
59012 ATGCACTCTTGGCGCTCTTCCATCCCA
65 ATGCACTCTTGGCGCTCTTCCATCCCA
* * *
59039 ACGAGGGGTCTCTTGGCCAGACGAACATGCCATTCTAACGAGGGCGTCTCTTGGAAAGACGAACA
1 ACGAGGGGTCTCTTGGCGAGACGAACATGCCATTCCAACGAGGGAGTCTCTTGGAAAGACGAACA
*
59104 TGCGCTCTTGGCGCTCTTCCATCCCA
66 TGCACTCTTGGCGCTCTTCCATCCCA
* * * * ** * * * *
59130 ACGA---GTCTCTTGGAGAGACGTACATGCGC--TCTTAGCGA--GACG-AACAT-G-TA-CCCA
1 ACGAGGGGTCTCTTGGCGAGACGAACATGC-CATTC-CAACGAGGGA-GTCTCTTGGAAAGACGA
* * * *
59184 TAGATG-A-TTTTGGCGAGACGAACGTGCCATCCCA
63 -ACATGCACTCTTGGC--G-C--TC-TTCCATCCCA
* * * * *
59218 ACGAGGAGTCTCTTTGCGAGACGAACATG-CATCCCGACGAGGGCGTCTCTTGGAAAGACGAACA
1 ACGAGGGGTCTCTTGGCGAGACGAACATGCCATTCCAACGAGGGAGTCTCTTGGAAAGACGAACA
*
59282 TGCGCTCTTGGCGCTCTTCCATCCCA
66 TGCACTCTTGGCGCTCTTCCATCCCA
* * * *
59308 ACGA---GTCTCTTGGAGAGACGTACATG-CATCCCGACGAGGGAGTCTCT
1 ACGAGGGGTCTCTTGGCGAGACGAACATGCCATTCCAACGAGGGAGTCTCT
59355 AGGTGGGACG
Statistics
Matches: 248, Mismatches: 45, Indels: 51
0.72 0.13 0.15
Matches are distributed among these distances:
82 6 0.02
83 2 0.01
84 6 0.02
85 2 0.01
86 3 0.01
87 43 0.17
88 38 0.15
89 2 0.01
90 16 0.06
91 104 0.42
92 10 0.04
93 2 0.01
94 6 0.02
95 2 0.01
96 6 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (91 bp):
ACGAGGGGTCTCTTGGCGAGACGAACATGCCATTCCAACGAGGGAGTCTCTTGGAAAGACGAACA
TGCACTCTTGGCGCTCTTCCATCCCA
Found at i:59080 original size:129 final size:129
Alignment explanation
Indices: 58734--59106 Score: 488
Period size: 127 Copynumber: 2.9 Consensus size: 129
58724 ATCCAATAAA
**
58734 GGAGTCTCTTGGCGAGACGAACATGCACTCTTGGCTTTCTTCCATCCCAACGAGGGAGTCTCTTG
1 GGAGTCTCTTGGCGAGACGAACATGCACTCTTGGCGCTCTTCCATCCCAACGAGGGAGTCTCTTG
* * * *
58799 G-AGAGACGAACATGCATCCTGACGAGGGAGTCTCTTGGTGAGGCGACCAT--ATGAAAAACGAG
66 GCA-AGACGAACATGCATTCTGACGAGGGAGTCTCTTGGAGAGACGAACATGCATGAAAAACGAG
* * * * * *
58861 AGTGCCTTTTGGTGTGACGAACATGCACTCTTGGCGCTCTTCCATCCCAACGAGGGAGTCTCTTG
1 GGAGTCTCTTGGCGAGACGAACATGCACTCTTGGCGCTCTTCCATCCCAACGAGGGAGTCTCTTG
* ***
58926 GCAAGACGAACATGCATT-TCGACGAGGGAGTCTCTTGGCGAGACGAACATGCCAT-TCCAACGA
66 GCAAGACGAACATGCATTCT-GACGAGGGAGTCTCTTGGAGAGACGAACATG-CATGAAAAACGA
58989 G
129 G
58990 GGAGTCTCTTGGCGAGACGAACATGCACTCTTGGCGCTCTTCCATCCCAACGAGGG-GTCTCTTG
1 GGAGTCTCTTGGCGAGACGAACATGCACTCTTGGCGCTCTTCCATCCCAACGAGGGAGTCTCTTG
* * * *
59054 GCCAGACGAACATGCCATTCTAACGAGGGCGTCTCTTGGAAAGACGAACATGC
66 GCAAGACGAACATG-CATTCTGACGAGGGAGTCTCTTGGAGAGACGAACATGC
59107 GCTCTTGGCG
Statistics
Matches: 213, Mismatches: 26, Indels: 13
0.85 0.10 0.05
Matches are distributed among these distances:
126 1 0.00
127 99 0.46
128 23 0.11
129 87 0.41
130 3 0.01
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (129 bp):
GGAGTCTCTTGGCGAGACGAACATGCACTCTTGGCGCTCTTCCATCCCAACGAGGGAGTCTCTTG
GCAAGACGAACATGCATTCTGACGAGGGAGTCTCTTGGAGAGACGAACATGCATGAAAAACGAG
Found at i:59258 original size:36 final size:37
Alignment explanation
Indices: 59193--59284 Score: 114
Period size: 37 Copynumber: 2.5 Consensus size: 37
59183 ATAGATGATT
*
59193 TTGGCGAGACGAACGTGCCATCCCAACGA-GGAGTCTC
1 TTGGCGAGACGAACATG-CATCCCAACGAGGGAGTCTC
* * *
59230 TTTGCGAGACGAACATGCATCCCGACGAGGGCGTCTC
1 TTGGCGAGACGAACATGCATCCCAACGAGGGAGTCTC
**
59267 TTGGAAAGACGAACATGC
1 TTGGCGAGACGAACATGC
59285 GCTCTTGGCG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
36 10 0.21
37 37 0.79
ACGTcount: A:0.26, C:0.27, G:0.29, T:0.17
Consensus pattern (37 bp):
TTGGCGAGACGAACATGCATCCCAACGAGGGAGTCTC
Found at i:59491 original size:75 final size:75
Alignment explanation
Indices: 59368--59625 Score: 453
Period size: 75 Copynumber: 3.4 Consensus size: 75
59358 TGGGACGATC
* * * *
59368 ATACGGGGGCGTCAGTCTAGGCGTTTAGCCGTCTGCGGGTGGCGTCTGCTTGGACGCTCGGCCTC
1 ATACGGGGGCGCCAGTCTAGGCGCTCAGCCGTCTGCGGGCGGCGTCTGCTTGGACGCTCGGCCTC
59433 GCTGAGAGTT
66 GCTGAGAGTT
*
59443 ATACGGGGGCGCCAGTCTAGGCGCTCAGCCATCTGCGGGCGGCGTCTGCTTGGACGCTCGGCCTC
1 ATACGGGGGCGCCAGTCTAGGCGCTCAGCCGTCTGCGGGCGGCGTCTGCTTGGACGCTCGGCCTC
59508 GCTGAGAGTT
66 GCTGAGAGTT
*
59518 ATACGGGGGCGCCAGTCTAGGCGCTCAGCCGTCTGCGGGCGGCGTCTGTTTGGACGCTCGGCCTC
1 ATACGGGGGCGCCAGTCTAGGCGCTCAGCCGTCTGCGGGCGGCGTCTGCTTGGACGCTCGGCCTC
59583 GCTGAGAGTT
66 GCTGAGAGTT
*
59593 ATACGGGGGCGCCAGTCTAGGCACTCAGCCGTC
1 ATACGGGGGCGCCAGTCTAGGCGCTCAGCCGTC
59626 AGAGACGAAG
Statistics
Matches: 175, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 175 1.00
ACGTcount: A:0.12, C:0.29, G:0.38, T:0.21
Consensus pattern (75 bp):
ATACGGGGGCGCCAGTCTAGGCGCTCAGCCGTCTGCGGGCGGCGTCTGCTTGGACGCTCGGCCTC
GCTGAGAGTT
Found at i:59950 original size:27 final size:28
Alignment explanation
Indices: 59907--59974 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
59897 TTCACGGCAG
59907 AAGGCTGACGAACATGCAA-GTGTTCCT
1 AAGGCTGACGAACATGCAATGTGTTCCT
* *
59934 TAGGTTGACGAACATGCAATGTGTTCCT
1 AAGGCTGACGAACATGCAATGTGTTCCT
59962 AAGGCTGACGAAC
1 AAGGCTGACGAAC
59975 TATGGTGTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 17 0.47
28 19 0.53
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (28 bp):
AAGGCTGACGAACATGCAATGTGTTCCT
Found at i:63976 original size:27 final size:30
Alignment explanation
Indices: 63935--64007 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 30
63925 ATTCACCTTT
63935 TAAGGGATTCA-TTTGT-CC-AA-AAAAACA
1 TAAGGGATT-ATTTTGTCCCAAATAAAAACA
63962 TAAGGGATTATTTTGTCCCAAAATAAAAACA
1 TAAGGGATTATTTTGTCCC-AAATAAAAACA
* *
63993 TAAAGGATTTTTTTG
1 TAAGGGATTATTTTG
64008 GGTATTTAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
26 1 0.03
27 14 0.36
28 2 0.05
30 2 0.05
31 20 0.51
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (30 bp):
TAAGGGATTATTTTGTCCCAAATAAAAACA
Found at i:64118 original size:15 final size:15
Alignment explanation
Indices: 64098--64127 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
64088 GCCACGTCAC
64098 CAAATTTGACGGCCA
1 CAAATTTGACGGCCA
64113 CAAATTTGACGGCCA
1 CAAATTTGACGGCCA
64128 TTAGTCACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (15 bp):
CAAATTTGACGGCCA
Found at i:64246 original size:31 final size:31
Alignment explanation
Indices: 64196--64261 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
64186 TTTTGAAGCG
*
64196 TAAGGGATTAATTTATCCCAAAA-AAAAGACA
1 TAAGAGATTAATTTATCCCAAAAGAAAA-ACA
* *
64227 TAAGAGATTATTTTGTCCCAAAAGAAAAACA
1 TAAGAGATTAATTTATCCCAAAAGAAAAACA
64258 TAAG
1 TAAG
64262 GGAATTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 27 0.87
32 4 0.13
ACGTcount: A:0.50, C:0.12, G:0.14, T:0.24
Consensus pattern (31 bp):
TAAGAGATTAATTTATCCCAAAAGAAAAACA
Found at i:69570 original size:16 final size:15
Alignment explanation
Indices: 69545--69579 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
69535 GGTTTTTCAA
69545 AAAATCCAAAAAAATC
1 AAAATCC-AAAAAATC
*
69561 AAAATTCAAAAAATC
1 AAAATCCAAAAAATC
69576 AAAA
1 AAAA
69580 AAGAATTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14
Consensus pattern (15 bp):
AAAATCCAAAAAATC
Found at i:75566 original size:29 final size:30
Alignment explanation
Indices: 75526--75603 Score: 122
Period size: 30 Copynumber: 2.6 Consensus size: 30
75516 ACTTCTAGCG
*
75526 TTTGGACGTTTTGCCCCCTGAAC-TTCAAT
1 TTTGGACGTTTTGCCCCCTAAACTTTCAAT
* *
75555 TTTGGACATTTTACCCCCTAAACTTTCAAT
1 TTTGGACGTTTTGCCCCCTAAACTTTCAAT
75585 TTTGGACGTTTTGCCCCCT
1 TTTGGACGTTTTGCCCCCT
75604 CTCAAACGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 20 0.47
30 23 0.53
ACGTcount: A:0.18, C:0.28, G:0.14, T:0.40
Consensus pattern (30 bp):
TTTGGACGTTTTGCCCCCTAAACTTTCAAT
Found at i:75794 original size:30 final size:28
Alignment explanation
Indices: 75759--75825 Score: 89
Period size: 30 Copynumber: 2.3 Consensus size: 28
75749 GTTTGAGAGG
*
75759 GGGCAAAACGTCGAAAATTGAGAGTTTAGA
1 GGGCAAAACGTCGAAAATTGA-AATTTA-A
* *
75789 GGGCAAAATGTCTAAAATTGAAATTTAA
1 GGGCAAAACGTCGAAAATTGAAATTTAA
75817 GGGCAAAAC
1 GGGCAAAAC
75826 ATCCAAACGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 9 0.27
29 5 0.15
30 19 0.58
ACGTcount: A:0.43, C:0.10, G:0.25, T:0.21
Consensus pattern (28 bp):
GGGCAAAACGTCGAAAATTGAAATTTAA
Found at i:78235 original size:31 final size:31
Alignment explanation
Indices: 78067--78235 Score: 151
Period size: 31 Copynumber: 5.5 Consensus size: 31
78057 TCCTTTAGTG
* * *
78067 CACGTGGCATGCCACGTGTCACTTTTTGGTA
1 CACGTGGCGTGCCACGTGTCACTTTTTGATC
* * * * *
78098 CATGTGGTGTGCCACGTATCACTTTTTGGTA
1 CACGTGGCGTGCCACGTGTCACTTTTTGATC
* * * *
78129 CATGTGACGTGCCCCGTGTCACTTTTTG-GC
1 CACGTGGCGTGCCACGTGTCACTTTTTGATC
* * *
78159 ACACGCGACGTGCCATGTGTCACTTTTTGATC
1 -CACGTGGCGTGCCACGTGTCACTTTTTGATC
** *
78191 CACGTGGTTTGCCACGTGTTACTTTTTGATC
1 CACGTGGCGTGCCACGTGTCACTTTTTGATC
*
78222 CACGTGGCATGCCA
1 CACGTGGCGTGCCA
78236 TGTCGAACAC
Statistics
Matches: 113, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
31 112 0.99
32 1 0.01
ACGTcount: A:0.15, C:0.26, G:0.25, T:0.34
Consensus pattern (31 bp):
CACGTGGCGTGCCACGTGTCACTTTTTGATC
Found at i:78943 original size:22 final size:21
Alignment explanation
Indices: 78913--78957 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
78903 GCAAAAGTGT
78913 AAAAAGGGGAGCGGTATTTAGC
1 AAAAAGGGGA-CGGTATTTAGC
* *
78935 AAAAGGGGGACGGTGTTTAGC
1 AAAAAGGGGACGGTATTTAGC
78956 AA
1 AA
78958 TCCAAATATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.36, C:0.09, G:0.38, T:0.18
Consensus pattern (21 bp):
AAAAAGGGGACGGTATTTAGC
Found at i:87442 original size:53 final size:53
Alignment explanation
Indices: 87362--87468 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
87352 GATTAAATAT
*
87362 TTACCATTCTGATTTAAAAGTAATTTAAGAACTAAAGACCGCTTTTTAACTGA
1 TTACCATTCTGATTTAAAAGTAATTTAAGAACTAAAGACAGCTTTTTAACTGA
*
87415 TTACCATTCTGATTTAAAAGTAATTTAATAACTAAAGACAGCTTTTTAACTGA
1 TTACCATTCTGATTTAAAAGTAATTTAAGAACTAAAGACAGCTTTTTAACTGA
87468 T
1 T
87469 ACAGGGGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.37
Consensus pattern (53 bp):
TTACCATTCTGATTTAAAAGTAATTTAAGAACTAAAGACAGCTTTTTAACTGA
Found at i:93179 original size:7 final size:7
Alignment explanation
Indices: 93167--93208 Score: 59
Period size: 7 Copynumber: 5.9 Consensus size: 7
93157 GATCACAAAT
93167 GCAAAAA
1 GCAAAAA
93174 GCAAAAA
1 GCAAAAA
93181 GC-AAAA
1 GCAAAAA
93187 GCAAATTAA
1 GCAAA--AA
93196 GCAAAAA
1 GCAAAAA
93203 GCAAAA
1 GCAAAA
93209 GATTTTTTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
6 6 0.19
7 19 0.59
9 7 0.22
ACGTcount: A:0.67, C:0.14, G:0.14, T:0.05
Consensus pattern (7 bp):
GCAAAAA
Found at i:96077 original size:3 final size:3
Alignment explanation
Indices: 96069--96112 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
96059 ACTTACAAAA
96069 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
96113 ATATATATGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:96711 original size:10 final size:9
Alignment explanation
Indices: 96696--96727 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
96686 TTAACCTTAA
*
96696 TTTTTTTCC
1 TTTTTTTCT
96705 TTTTTTTCT
1 TTTTTTTCT
96714 TTTTTTTCT
1 TTTTTTTCT
96723 TTTTT
1 TTTTT
96728 CTTCCCCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:103502 original size:14 final size:14
Alignment explanation
Indices: 103481--103530 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
103471 TTTAGAAATG
103481 ATATATATAATATATA
1 ATATATAT-A-ATATA
103497 ATATATATAATATA
1 ATATATATAATATA
*
103511 ATAT-TATATTA-A
1 ATATATATAATATA
103523 AT-TATATA
1 ATATATATA
103531 TGGACATGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 1 0.03
12 7 0.22
13 6 0.19
14 9 0.28
15 1 0.03
16 8 0.25
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
ATATATATAATATA
Found at i:103894 original size:3 final size:3
Alignment explanation
Indices: 103886--103937 Score: 95
Period size: 3 Copynumber: 17.0 Consensus size: 3
103876 TTTTCTTTTC
103886 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
103935 TTA
1 TTA
103938 CTTAAATAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 45 0.94
4 3 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Done.