Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008460.1 Corchorus capsularis cultivar CVL-1 contig08481, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7523
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:3856 original size:9 final size:8

Alignment explanation


    Indices: 3842--3910  Score: 52
    Period size: 8  Copynumber: 8.1  Consensus size: 8

       3832 CCCTTAAGTT

                     
       3842 TTTTTTTCC
          1 TTTTTTT-C

                    
       3851 TTTTTTTC
          1 TTTTTTTC

                    
       3859 -TTTTTTC
          1 TTTTTTTC

                      *
       3866 TTTTCTAATTT
          1 TTTT-T--TTC

                    *
       3877 TTATTTTTA
          1 TT-TTTTTC

                    
       3886 TTTTTTTC
          1 TTTTTTTC

                     
       3894 TTTTGTTT-
          1 TTTT-TTTC

                    
       3902 TTTTTTTC
          1 TTTTTTTC

             
       3910 T
          1 T

       3911 CAAAATTGGT


Statistics
Matches: 50,  Mismatches: 3, Indels: 15
        0.74            0.04        0.22

Matches are distributed among these distances:
   7   10  0.20
   8   18  0.36
   9   15  0.30
  11    5  0.10
  12    2  0.04

ACGTcount: A:0.06, C:0.10, G:0.01, T:0.83


Consensus pattern (8 bp):   
TTTTTTTC
Done.