Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008461.1 Corchorus capsularis cultivar CVL-1 contig08482, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6498
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34


Found at i:32 original size:1 final size:1

Alignment explanation


    Indices: 1--25  Score: 50
    Period size: 1  Copynumber: 25.0  Consensus size: 1

                                     
          1 AAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAA

         26 CCAAAAATTC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   24  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Found at i:5004 original size:20 final size:20

Alignment explanation


    Indices: 4979--5019  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       4969 TTGATCCAAC

                                
       4979 CCCGCATTGGTCAAAATTAA
          1 CCCGCATTGGTCAAAATTAA

                                
       4999 CCCGCATTGGTCAAAATTAA
          1 CCCGCATTGGTCAAAATTAA

             
       5019 C
          1 C

       5020 ATATATTGCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24


Consensus pattern (20 bp):   
CCCGCATTGGTCAAAATTAA

Done.