Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008463.1 Corchorus capsularis cultivar CVL-1 contig08484, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97367

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6031--6344
110
2.8
110
85
8
391
31
22
11
34
1.89
8349--8397
23
2.1
23
100
0
98
24
18
20
36
1.94
13619--13667
25
2.0
25
87
0
71
36
18
10
34
1.85
14046--14077
3
10.7
3
100
0
64
34
34
0
31
1.58
32091--32124
16
2.1
16
88
5
50
55
2
0
41
1.15
33731--33797
23
3.0
22
71
18
57
35
1
14
47
1.54
34165--34245
39
2.0
40
97
2
155
27
9
37
25
1.88
34868--34974
53
2.0
53
92
0
178
40
6
12
41
1.68
38351--38403
25
2.0
26
82
7
63
43
5
0
50
1.25
43669--43718
27
2.0
26
88
11
77
30
14
10
46
1.77
46010--46319
92
3.2
92
77
10
334
23
25
26
24
2.00
46101--46296
54
3.7
54
79
14
221
23
26
28
22
1.99
51443--51541
22
4.8
22
68
21
61
37
12
9
41
1.74
51443--51591
61
2.4
62
87
4
205
35
11
8
44
1.72
51619--51667
22
2.2
22
85
7
64
28
14
4
53
1.59
51694--52116
22
19.6
22
72
11
94
36
15
9
39
1.79
51640--52097
44
10.5
42
71
13
220
36
15
9
38
1.80
51853--51906
23
2.4
23
93
6
94
40
9
5
44
1.60
51807--52057
126
2.0
126
80
4
283
35
15
8
40
1.78
52192--52316
22
5.7
22
80
1
117
32
12
10
44
1.75
52192--52316
44
2.9
44
76
5
146
32
12
10
44
1.75
52399--52484
38
2.3
38
78
13
106
54
12
18
13
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52614--52678
31
2.1
31
83
8
80
50
4
16
27
1.65
57467--57543
29
2.7
29
95
2
138
36
6
19
37
1.78
58749--58783
2
17.5
2
100
0
70
48
0
0
51
1.00
59366--59402
2
19.5
2
89
10
60
48
0
0
51
1.00
60077--60109
15
2.2
15
94
0
57
48
6
3
42
1.43
63439--63470
1
32.0
1
100
0
64
0
0
0
100
0.00
74177--74786
212
2.9
212
86
5
819
40
12
11
35
1.80
74679--74723
23
2.0
23
90
0
72
31
15
20
33
1.93
79947--80011
31
2.2
29
88
5
94
27
16
13
41
1.87
79947--80023
29
2.5
31
87
4
104
27
22
12
37
1.91
80718--80798
29
2.8
28
84
7
99
35
12
25
25
1.91
86341--86379
6
6.5
6
96
0
69
64
15
17
2
1.41
86727--86755
1
29.0
1
100
0
58
0
0
0
100
0.00
93397--93474
40
2.0
40
86
0
111
29
12
12
44
1.80
96906--96942
17
2.1
18
95
5
67
27
35
10
27
1.90

Tables:   1

The End!