Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008465.1 Corchorus capsularis cultivar CVL-1 contig08486, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5473
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24


Found at i:5180 original size:21 final size:21

Alignment explanation


    Indices: 5147--5190  Score: 61
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       5137 TACAAGTTAT

                 *  *         *  
       5147 AAAGGGTATAACATTACAGTA
          1 AAAGGCTAAAACATTACAATA

                                 
       5168 AAAGGCTAAAACATTACAATA
          1 AAAGGCTAAAACATTACAATA

              
       5189 AA
          1 AA

       5191 GCTCCCTAAA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.55, C:0.11, G:0.14, T:0.20


Consensus pattern (21 bp):   
AAAGGCTAAAACATTACAATA
Done.