Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008470.1 Corchorus capsularis cultivar CVL-1 contig08491, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2578
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30


Found at i:1871 original size:33 final size:33

Alignment explanation


    Indices: 1795--1874  Score: 97
    Period size: 33  Copynumber: 2.4  Consensus size: 33

       1785 ATATGCCCAT

                       *                   * 
       1795 GTCGCGTGGCCAGTGTTGGCCGGGCATCTCCGA
          1 GTCGCGTGGCCGGTGTTGGCCGGGCATCTCCAA

              **                 *   *       
       1828 GTTACGTGGCCGGTGTTGGCCTGGCTTCTCCAA
          1 GTCGCGTGGCCGGTGTTGGCCGGGCATCTCCAA

                 *        
       1861 GTCGCATGGCCGGT
          1 GTCGCGTGGCCGGT

       1875 CACTAGTCCT


Statistics
Matches: 38,  Mismatches: 9, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  33   38  1.00

ACGTcount: A:0.09, C:0.29, G:0.38, T:0.25


Consensus pattern (33 bp):   
GTCGCGTGGCCGGTGTTGGCCGGGCATCTCCAA
Done.