Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008473.1 Corchorus capsularis cultivar CVL-1 contig08494, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56576

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--393
35
11.3
35
87
1
504
27
17
18
37
1.93
2--393
104
3.8
105
90
0
563
27
17
18
37
1.93
1389--1478
44
2.1
44
89
2
146
23
22
4
50
1.67
1399--1493
22
4.4
21
82
15
122
21
24
4
50
1.66
1441--1529
36
2.5
34
75
8
88
17
24
5
51
1.67
1503--1586
14
6.0
14
72
8
73
17
21
7
53
1.67
1512--1586
28
2.7
28
81
10
82
17
21
6
54
1.65
1581--1679
26
3.5
26
70
25
85
25
16
5
53
1.63
1608--1691
33
2.5
33
81
9
107
22
16
4
55
1.59
1697--1757
21
2.9
21
85
2
86
22
22
4
49
1.69
1964--2091
34
3.6
34
69
18
109
27
14
7
50
1.71
5785--5863
27
3.0
27
84
1
88
39
24
21
15
1.91
6678--6824
73
2.0
72
83
13
187
46
6
12
34
1.66
6752--6942
86
2.2
87
83
9
239
43
5
16
34
1.70
9237--9295
31
1.9
31
85
0
82
32
18
5
44
1.72
10391--10424
2
17.0
2
100
0
68
50
0
0
50
1.00
11036--11198
31
5.5
31
72
17
123
16
22
26
34
1.95
11088--11189
52
1.9
53
88
2
152
16
20
26
36
1.94
12911--12942
2
16.0
2
100
0
64
50
0
0
50
1.00
14952--14991
20
2.0
20
100
0
80
40
25
5
30
1.77
27624--27669
20
2.3
20
88
3
67
23
4
15
56
1.57
27736--27792
28
2.0
28
96
0
105
43
3
15
36
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27885--27919
14
2.5
14
90
0
52
65
0
34
0
0.93
40651--40689
10
3.9
10
89
0
60
43
20
5
30
1.73
40651--40689
20
2.0
20
100
0
78
43
20
5
30
1.73
41514--41538
9
2.8
9
100
0
50
88
0
0
12
0.53
41696--41752
12
4.7
12
89
4
78
28
26
14
31
1.94
41698--41752
25
2.2
24
93
3
92
27
25
14
32
1.95
43359--43424
28
2.5
28
80
9
68
51
1
3
43
1.26
44335--44359
12
2.1
12
100
0
50
32
16
8
44
1.76
44773--45259
181
2.7
178
78
7
473
35
17
12
35
1.87
46074--46131
3
18.7
3
92
7
98
34
0
0
65
0.93
47910--47956
2
23.5
2
95
0
85
48
0
2
48
1.13
48156--48233
21
3.6
21
77
3
66
46
8
15
29
1.76
48262--48315
21
2.5
21
87
3
63
38
11
11
38
1.76
54665--54713
26
1.9
26
88
12
75
2
36
0
61
1.08
56436--56469
15
2.1
17
89
10
54
52
11
0
35
1.38

Tables:   1

The End!