Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008474.1 Corchorus capsularis cultivar CVL-1 contig08495, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26390

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3832--3856
4
6.2
4
100
0
50
0
24
0
76
0.80
5795--5824
3
10.0
3
100
0
60
33
66
0
0
0.92
6064--6101
2
19.0
2
84
10
51
52
2
0
44
1.14
6552--6677
64
2.0
64
96
0
234
37
9
18
34
1.83
6736--6775
14
2.7
15
92
7
73
25
5
5
65
1.34
6975--7010
14
2.5
15
95
4
65
22
2
5
69
1.22
6974--7011
15
2.5
16
87
12
62
21
2
5
71
1.19
7881--8022
76
1.9
75
88
2
214
35
16
13
33
1.88
8187--8244
30
1.9
30
89
6
91
24
13
3
58
1.51
12187--12211
6
4.2
6
100
0
50
32
16
0
52
1.44
17412--17493
41
2.0
41
95
4
148
31
17
26
24
1.97
19778--19828
20
2.7
18
80
16
59
1
3
17
76
1.03
20198--20242
21
2.1
21
100
0
90
37
8
22
31
1.85
21157--21212
3
18.7
3
100
0
112
32
0
0
67
0.91
24652--24685
16
2.1
16
100
0
68
50
14
5
29
1.67

Tables:   1

The End!