Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008477.1 Corchorus capsularis cultivar CVL-1 contig08498, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34992

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
870--926
16
3.6
15
74
9
51
7
14
31
47
1.70
18131--18202
37
1.9
37
91
5
119
37
8
15
38
1.77
21799--21831
17
1.9
17
93
0
57
33
12
27
27
1.92
22594--22641
24
2.0
25
87
4
71
72
4
10
12
1.24
29378--29426
24
2.0
24
92
0
80
38
10
16
34
1.82
32085--32141
23
2.4
24
91
5
98
35
15
28
21
1.94
32113--32191
36
2.4
33
86
14
110
34
12
24
29
1.92
32235--32278
22
2.0
21
86
4
61
52
13
18
15
1.75
33091--33120
7
4.1
7
95
4
51
13
16
0
70
1.18
34957--34992
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!