Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008481.1 Corchorus capsularis cultivar CVL-1 contig08502, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61341

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2251--2351
29
3.4
29
83
4
112
15
30
17
35
1.92
2470--2496
13
2.1
13
100
0
54
22
29
29
18
1.97
2519--2598
29
2.7
30
84
7
110
35
16
31
17
1.92
12953--12985
2
16.5
2
87
12
50
48
3
0
48
1.17
20830--20864
11
3.2
11
91
0
61
80
17
2
0
0.84
25725--25749
12
2.1
12
100
0
50
52
0
16
32
1.44
26931--26964
16
2.1
16
100
0
68
11
32
5
50
1.63
38340--38366
2
13.5
2
100
0
54
51
0
0
48
1.00
47865--48056
59
3.3
59
99
0
375
31
17
6
44
1.75
49247--49292
15
2.8
17
77
12
51
71
4
2
21
1.14
50775--50859
31
2.6
33
85
3
102
38
22
21
17
1.93
50760--50859
31
3.2
31
80
5
101
38
24
20
18
1.93
50805--50907
31
3.3
31
83
2
109
40
22
19
17
1.91
51263--51313
5
10.4
5
91
4
86
39
0
1
58
1.09
52791--52829
17
2.4
16
87
12
53
82
0
2
15
0.79
52793--52830
13
2.7
14
88
8
51
78
0
2
18
0.86
52923--52952
13
2.3
13
94
0
51
6
40
0
53
1.27
53082--53116
17
2.1
16
89
10
52
14
0
8
77
0.99
60805--60865
28
2.2
28
100
0
122
40
14
13
31
1.84
61312--61340
2
15.0
2
92
7
51
48
0
0
51
1.00

Tables:   1

The End!