Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008484.1 Corchorus capsularis cultivar CVL-1 contig08505, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64535

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2062--2103
21
2.0
22
81
13
52
38
9
11
40
1.75
3954--3983
14
2.1
14
93
0
51
40
13
0
46
1.43
7684--7725
16
2.6
16
100
0
84
59
0
40
0
0.97
9665--9689
13
1.9
13
100
0
50
16
32
0
52
1.44
10284--10324
5
8.4
5
81
13
50
41
19
36
2
1.65
16025--16053
5
5.8
5
100
0
58
62
0
0
37
0.96
20828--20857
11
2.8
11
95
5
53
0
6
0
93
0.35
24902--24976
29
2.6
29
95
0
141
20
14
16
49
1.80
26394--26480
31
2.8
31
82
3
86
18
21
25
34
1.96
26421--26486
31
2.1
31
88
0
96
19
19
25
34
1.96
26782--26891
49
2.2
49
82
6
134
33
12
10
42
1.78
26795--26892
49
2.0
49
89
0
151
31
13
10
44
1.77
27133--27193
26
2.3
26
97
0
113
45
14
13
26
1.81
29635--29664
15
2.0
15
93
0
51
0
10
10
80
0.92
31536--31561
2
13.0
2
100
0
52
0
0
50
50
1.00
44338--44399
27
2.3
27
94
0
106
16
20
33
29
1.94
44342--44408
27
2.6
25
83
6
73
16
17
32
32
1.93
44412--44535
63
2.0
63
83
0
158
10
20
34
34
1.87
44446--44618
30
5.9
29
75
13
140
10
23
34
32
1.88
44507--44568
24
2.6
24
94
0
106
9
29
32
29
1.89
44507--44598
24
3.6
24
78
16
94
9
27
33
29
1.89
45151--45217
27
2.5
27
76
9
73
49
13
11
25
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47586--47610
13
1.9
13
100
0
50
0
8
0
92
0.40
50767--50799
14
2.2
15
89
10
50
18
0
3
78
0.87
50767--50799
5
6.6
5
89
10
50
18
0
3
78
0.87
53207--53293
42
2.0
43
86
4
122
27
25
12
34
1.92
54662--54744
43
2.0
42
97
2
157
43
7
9
39
1.65
61326--61361
12
3.0
12
95
0
63
16
11
0
72
1.12
61329--61361
6
5.5
6
92
0
57
18
12
0
69
1.18
64497--64529
2
16.5
2
100
0
66
51
0
0
48
1.00

Tables:   1

The End!