Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008489.1 Corchorus capsularis cultivar CVL-1 contig08510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45607

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--963
332
2.9
331
88
4
1449
35
15
14
34
1.88
2392--2435
11
4.0
11
81
0
52
50
9
2
38
1.47
14856--14935
40
2.0
40
97
0
151
26
12
21
40
1.89
17913--17947
2
17.5
2
88
11
54
48
2
0
48
1.16
19116--19141
8
3.2
8
100
0
52
15
23
11
50
1.76
20888--20924
7
5.3
7
100
0
74
43
13
13
29
1.82
22001--22029
6
4.8
6
100
0
58
48
0
17
34
1.47
22860--22889
2
15.0
2
100
0
60
50
0
0
50
1.00
26988--27023
2
18.5
2
94
5
65
50
0
0
50
1.00
28455--28484
3
10.0
3
92
0
51
36
0
0
63
0.95
35209--35240
16
2.0
16
93
0
55
12
46
28
12
1.78
35462--35505
4
11.2
4
85
4
54
27
4
22
45
1.72
40793--40817
6
4.2
6
100
0
50
16
68
0
16
1.22
41640--41669
14
2.1
15
93
6
53
40
0
6
53
1.27

Tables:   1

The End!