Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008490.1 Corchorus capsularis cultivar CVL-1 contig08511, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71401

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2329--2354
2
13.0
2
100
0
52
50
0
0
50
1.00
3877--3965
35
2.5
35
94
0
151
51
17
14
15
1.76
9914--10018
31
3.5
30
84
5
122
34
20
12
33
1.90
9914--9999
29
2.9
30
89
3
120
37
20
10
31
1.87
11812--11916
31
3.5
30
84
5
122
33
12
20
34
1.90
12499--12523
13
1.9
13
100
0
50
0
0
8
92
0.40
19375--19401
14
1.9
14
100
0
54
33
0
0
66
0.92
19582--19657
38
2.0
38
89
5
118
27
23
15
32
1.95
19459--19778
159
2.0
159
92
4
538
27
20
14
38
1.91
19620--19969
124
2.9
119
93
4
578
26
18
15
40
1.90
24845--24928
30
2.8
29
78
7
89
20
10
58
10
1.61
26200--26230
6
5.2
6
92
0
53
0
12
0
87
0.55
26196--26239
16
2.7
17
86
10
65
0
15
0
84
0.63
27214--27238
12
2.1
12
100
0
50
0
52
0
48
1.00
29481--29545
32
2.0
32
100
0
130
47
18
15
18
1.82
29997--30086
45
2.0
45
100
0
180
42
31
4
22
1.73
30342--30421
40
2.0
40
97
0
151
36
22
13
27
1.92
44258--44284
3
9.0
3
100
0
54
0
33
0
66
0.92
44807--44833
2
13.5
2
100
0
54
0
51
0
48
1.00
45144--45173
3
9.7
3
92
7
51
33
66
0
0
0.92
45226--45251
7
3.7
7
100
0
52
23
46
15
15
1.83
46257--46295
7
5.7
7
87
6
62
15
33
35
15
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46256--46301
14
3.4
14
87
3
67
15
36
30
17
1.91
57446--57500
17
3.2
17
76
0
56
36
16
21
25
1.94
59902--59926
13
1.9
13
100
0
50
0
12
8
80
0.92
65969--66003
2
17.5
2
87
0
52
51
0
5
42
1.25
67085--67110
6
4.3
6
100
0
52
50
34
0
15
1.45
67242--67343
22
4.6
22
72
14
75
36
9
16
37
1.82
67473--67538
22
3.0
22
78
10
57
39
6
16
37
1.74
67578--67814
22
10.7
22
71
11
119
40
11
13
33
1.82
67621--67789
66
2.6
65
79
4
171
41
11
13
33
1.80
67885--67935
19
2.6
20
81
6
68
43
11
17
27
1.84
67924--68091
44
3.8
44
85
9
191
43
11
10
34
1.75
68012--68186
44
4.0
45
83
3
203
43
10
14
31
1.80
67923--68263
22
15.7
22
68
10
146
43
10
12
33
1.77
68231--68277
21
2.2
20
79
17
51
48
8
10
31
1.68

Tables:   1

The End!