Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008493.1 Corchorus capsularis cultivar CVL-1 contig08514, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98143

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3146--3188
21
2.0
21
100
0
86
58
18
4
18
1.56
3140--3251
59
1.9
59
98
0
215
51
16
8
22
1.72
3205--3247
21
2.0
21
95
0
77
60
16
4
18
1.52
13138--13163
10
2.6
10
100
0
52
30
7
23
38
1.83
13602--13659
29
2.0
30
83
10
75
48
13
5
32
1.65
15476--15563
44
2.0
44
90
0
140
32
6
20
39
1.79
18792--18817
13
2.0
13
100
0
52
38
7
7
46
1.61
23144--23188
22
2.1
21
91
4
72
2
11
4
82
0.91
24442--24498
11
4.9
11
74
19
53
68
0
31
0
0.90
24441--24485
14
3.4
14
77
22
53
66
0
33
0
0.92
24445--24495
24
2.1
25
89
10
79
70
0
29
0
0.87
27478--29589
893
2.4
893
94
0
3666
32
14
15
37
1.88
29648--29693
2
23.0
2
100
0
92
50
0
0
50
1.00
34433--34475
20
2.2
20
95
0
77
69
6
4
18
1.29
34592--34666
27
2.7
29
84
16
104
48
12
5
34
1.63
37296--37336
10
4.1
10
84
9
57
12
26
0
60
1.31
37951--37991
21
2.0
21
85
9
57
41
2
4
51
1.36
38412--38455
15
3.0
15
86
3
54
34
0
0
65
0.93
40232--40275
15
3.0
15
86
3
54
65
0
0
34
0.93
41396--41571
97
1.8
97
87
2
264
34
5
21
38
1.77
56817--57231
202
2.0
204
90
4
667
35
14
15
34
1.89
57348--57392
20
2.2
20
88
0
63
26
11
20
42
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59557--59603
24
2.0
24
83
8
60
17
31
8
42
1.79
59717--59844
33
3.9
33
81
4
134
13
34
40
11
1.81
61478--61529
25
2.1
25
85
7
70
19
5
5
69
1.30
63863--63930
25
2.7
27
80
13
74
45
2
0
51
1.16
69382--69407
10
2.6
10
100
0
52
11
0
0
88
0.52
70471--70522
2
26.0
2
100
0
104
0
0
50
50
1.00
71202--71248
24
2.0
24
82
0
58
25
10
12
51
1.72
71828--71904
27
2.8
27
81
12
86
38
12
1
46
1.51
71859--71911
27
2.0
27
85
7
74
39
9
1
49
1.46
71984--72034
26
1.9
26
88
4
75
39
7
0
52
1.30
72024--72087
29
2.2
30
94
5
114
34
18
0
46
1.49
72891--72934
21
2.1
21
83
8
54
18
31
9
40
1.81
73116--73210
33
2.9
33
79
4
104
20
37
31
10
1.86
79902--79947
23
2.0
23
100
0
92
34
17
17
30
1.93
87294--87398
27
3.8
27
85
9
131
17
15
25
41
1.88
96311--96355
12
3.8
13
80
16
53
42
0
2
55
1.12
97438--97476
15
2.5
16
87
4
53
0
23
0
76
0.78
97439--97478
21
2.0
20
90
5
62
0
22
0
77
0.77

Tables:   1

The End!