Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008503.1 Corchorus capsularis cultivar CVL-1 contig08524, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18890
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31


Found at i:1119 original size:2 final size:2

Alignment explanation


    Indices: 1112--1144  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       1102 AAACAGTTTC

                                                             
       1112 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1145 GAAGACCAAA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:9128 original size:19 final size:19

Alignment explanation


    Indices: 9104--9143  Score: 80
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       9094 TTTTAGAGAA

                               
       9104 TACAATATTCAAATCTCAT
          1 TACAATATTCAAATCTCAT

                               
       9123 TACAATATTCAAATCTCAT
          1 TACAATATTCAAATCTCAT

              
       9142 TA
          1 TA

       9144 TAATCAAATA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38


Consensus pattern (19 bp):   
TACAATATTCAAATCTCAT
Done.