genome.fa.s8505.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008505.1 Corchorus capsularis cultivar CVL-1 contig08526, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68197

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761--801	21	2.1	18	86	13	55	36	12	26	24	1.91
6299--6340	2	21.5	2	95	4	77	52	0	0	47	1.00
7673--7721	20	2.4	20	77	12	55	32	26	2	38	1.68
14010--14118	54	2.0	54	98	0	209	27	18	10	44	1.82
15683--15758	33	2.6	29	85	12	93	48	11	11	27	1.75
18257--18429	90	1.9	90	86	6	244	31	13	4	50	1.62
22876--23136	106	2.5	105	90	4	393	41	9	8	40	1.69
22876--23136	105	2.5	103	89	5	389	41	9	8	40	1.69
30470--30536	21	3.1	21	72	10	64	25	17	5	50	1.69
30576--30675	35	2.9	34	75	12	107	14	28	6	52	1.65
30652--30694	19	2.2	20	95	4	79	16	25	9	48	1.75
30691--30742	7	7.6	7	80	4	61	13	25	3	57	1.53
30678--30805	34	3.5	34	77	15	107	14	22	7	55	1.63
30694--30916	20	11.0	20	73	17	117	17	21	5	55	1.63
30751--30991	22	11.3	22	75	13	168	21	19	5	53	1.65
30751--30937	62	3.0	64	78	11	190	20	19	5	53	1.66
30752--30978	106	2.1	107	79	8	241	21	20	5	52	1.67
31039--31075	15	2.6	14	87	8	56	18	27	5	48	1.70
31145--31247	34	3.1	33	84	5	127	13	19	6	60	1.55
31194--31387	22	9.6	21	71	18	101	19	20	5	54	1.64
31229--31387	22	7.6	21	75	9	137	19	21	5	53	1.65
31379--31449	30	2.3	32	83	9	94	26	16	8	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32719--32750	14	2.4	13	94	5	55	15	6	6	71	1.26
43138--43206	23	2.9	24	77	12	79	33	8	8	49	1.64
48829--48889	19	3.2	19	68	9	61	52	6	14	26	1.66
48830--48924	38	2.5	38	91	1	147	49	6	16	27	1.70
48712--49133	71	5.8	71	74	13	247	48	5	18	27	1.71
48987--49096	34	3.1	34	65	16	89	45	3	20	30	1.68
48778--49179	37	10.8	37	70	13	191	48	6	18	27	1.72
49003--49207	111	1.9	108	82	7	261	44	6	19	29	1.75
49274--49313	21	1.9	21	84	0	53	57	2	22	17	1.52
49281--49347	35	1.9	35	81	6	82	55	2	20	20	1.57
49210--49339	56	2.3	55	79	11	131	54	3	20	22	1.58
49279--49397	50	2.4	52	81	6	131	54	2	23	19	1.56
49323--49425	36	2.9	36	80	11	122	54	1	24	19	1.54
49386--49620	22	10.5	21	73	12	116	54	5	19	20	1.62
49474--49699	22	10.9	21	72	14	175	53	6	19	21	1.67
49572--49650	35	2.2	37	88	6	126	51	6	21	20	1.69
49496--49711	21	10.5	20	75	12	129	51	6	20	21	1.70
50366--50432	21	3.1	21	72	10	64	25	16	7	50	1.71
50474--50827	39	9.9	34	72	12	185	16	25	3	53	1.60
50560--50946	7	58.0	7	62	18	85	16	24	3	54	1.58
50614--50974	39	8.8	39	75	18	308	16	24	3	55	1.57
50597--50897	113	2.6	116	90	6	482	16	24	3	54	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50779--50980	46	4.2	46	86	6	244	16	22	3	56	1.55
50870--50943	19	3.8	19	71	7	67	14	28	2	54	1.55
50596--50924	74	4.3	75	71	17	244	17	24	3	55	1.57
50958--51154	22	9.3	21	75	11	161	22	20	4	52	1.65
51047--51110	13	4.9	13	70	14	51	25	23	4	46	1.71
51024--51112	39	2.2	42	86	8	130	23	21	6	48	1.74
55075--55144	27	2.6	27	86	0	86	38	24	15	21	1.92
57953--57989	11	3.5	11	82	17	51	72	2	18	5	1.15
58490--58514	8	3.1	8	100	0	50	12	28	36	24	1.91

Tables:   1

The End!