Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008509.1 Corchorus capsularis cultivar CVL-1 contig08530, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64781

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9105--9136
16
2.0
16
100
0
64
43
12
6
37
1.68
17514--17573
15
4.1
14
75
12
50
35
1
5
58
1.30
30380--30459
42
1.9
42
97
0
151
32
23
5
38
1.77
35399--35471
26
2.7
27
89
2
121
20
13
21
43
1.86
39057--39267
26
8.0
26
77
11
205
56
7
18
17
1.62
39061--39269
54
3.9
53
89
1
303
56
7
18
17
1.62
39060--39269
107
2.0
105
90
2
296
57
7
18
17
1.62
39454--39713
22
12.4
22
80
9
276
55
3
20
21
1.57
39347--39497
34
4.2
34
79
6
140
52
1
26
19
1.57
39432--39769
42
7.9
46
76
12
144
55
3
20
21
1.59
39572--39789
7
30.7
7
65
10
59
55
3
20
20
1.56
39708--39799
14
6.6
14
80
5
114
55
5
20
18
1.62
39467--39769
42
7.2
41
78
12
267
55
3
19
21
1.59
39708--39810
14
7.3
15
74
12
69
57
4
19
18
1.58
39743--39867
21
5.9
21
67
10
58
56
4
22
17
1.58
39757--39897
64
2.2
64
80
10
157
55
4
21
19
1.60
49880--49943
31
2.1
32
94
5
114
40
34
3
21
1.69
50684--50708
13
1.9
13
100
0
50
48
0
20
32
1.50
54590--54617
1
28.0
1
100
0
56
0
0
0
100
0.00
59317--59395
31
2.5
31
90
6
124
36
18
11
32
1.87
64362--64655
142
2.0
146
88
7
445
39
10
11
38
1.76

Tables:   1

The End!