Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008510.1 Corchorus capsularis cultivar CVL-1 contig08531, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4642
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37


Found at i:3064 original size:13 final size:13

Alignment explanation


    Indices: 3046--3070  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       3036 TTTAATTTAA

                         
       3046 TTTCTTTTATTAT
          1 TTTCTTTTATTAT

                        
       3059 TTTCTTTTATTA
          1 TTTCTTTTATTA

       3071 ATTTAAGTCA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76


Consensus pattern (13 bp):   
TTTCTTTTATTAT
Done.