Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008516.1 Corchorus capsularis cultivar CVL-1 contig08537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31221

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3020--3143
33
3.7
32
77
8
106
8
26
39
25
1.85
5851--5889
2
19.5
2
100
0
78
0
0
48
51
1.00
10393--10437
20
2.2
20
84
4
54
66
8
6
17
1.40
12725--12766
21
2.0
20
86
4
57
40
11
21
26
1.88
14126--14156
15
2.1
15
93
0
53
3
0
41
54
1.16
14124--14166
8
5.4
8
86
8
52
9
0
37
53
1.33
14164--14195
2
16.0
2
93
0
55
46
0
3
50
1.17
14510--14585
34
2.2
34
90
2
116
15
19
21
43
1.88
17025--17053
14
2.1
14
100
0
58
65
13
0
20
1.26
18940--19000
26
2.3
27
75
13
65
59
13
8
19
1.59
20350--20382
11
3.0
11
87
12
50
45
18
0
36
1.49
22811--23431
123
5.0
122
88
1
859
29
29
27
13
1.95
22811--23539
246
3.0
244
83
4
894
29
29
26
13
1.94
22811--23539
369
2.0
369
83
4
916
29
29
26
13
1.94
23812--24067
21
12.3
21
75
7
227
38
23
25
12
1.90
23811--23996
62
3.0
59
90
6
273
39
23
25
12
1.89
24080--24370
98
3.1
96
77
10
330
32
24
29
13
1.94
24164--24342
87
2.1
87
88
0
259
33
22
30
13
1.93
24339--24387
25
2.0
25
83
0
62
24
28
32
14
1.94
24931--24986
19
3.1
19
70
19
64
33
21
3
41
1.70
24922--24977
17
3.2
17
72
18
60
37
21
1
39
1.64

Tables:   1

The End!