Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008523.1 Corchorus capsularis cultivar CVL-1 contig08544, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17474

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--91
32
2.8
32
85
5
121
13
32
35
18
1.90
151--210
15
4.3
15
79
16
74
33
0
10
56
1.32
219--278
25
2.5
25
89
5
88
43
0
21
35
1.53
9145--9170
2
13.0
2
100
0
52
50
0
0
50
1.00
9212--9242
6
5.3
6
92
7
55
83
0
16
0
0.64
9212--9242
11
2.7
12
90
10
55
83
0
16
0
0.64
9810--9837
2
14.0
2
100
0
56
0
0
50
50
1.00
11786--11836
20
2.5
20
90
0
84
31
17
25
25
1.97
12201--12285
33
2.6
33
86
0
116
23
37
30
8
1.84
12201--12307
33
3.2
34
83
7
96
24
39
28
8
1.84
13375--13410
9
3.9
9
89
7
54
83
0
2
13
0.76
13375--13410
19
1.9
18
88
5
54
83
0
2
13
0.76
14789--14859
33
2.2
33
82
10
83
23
9
18
47
1.78
14879--14960
27
2.7
32
76
21
102
30
10
15
42
1.82
16738--16822
33
2.6
33
88
0
125
22
38
30
8
1.83
16738--16844
33
3.2
33
85
5
101
23
40
28
8
1.83

Tables:   1

The End!