Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008525.1 Corchorus capsularis cultivar CVL-1 contig08546, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23531

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
383--546
16
10.5
16
82
3
156
35
35
18
9
1.84
385--546
48
3.5
48
85
3
188
35
36
18
9
1.83
3061--3102
3
14.0
3
100
0
84
33
0
0
66
0.92
3238--3280
21
2.0
21
100
0
86
46
9
0
44
1.35
4328--4356
13
2.2
13
100
0
58
62
17
0
20
1.33
8068--8100
17
1.9
17
100
0
66
24
18
24
33
1.97
10110--10137
13
2.2
13
100
0
56
46
0
7
46
1.30
20992--21016
13
1.9
13
100
0
50
60
8
8
24
1.52
21105--21393
143
2.0
144
88
1
427
34
19
19
26
1.96
22337--22403
31
2.1
32
91
2
109
28
19
4
47
1.68
22680--22885
44
4.6
44
77
10
150
33
10
18
37
1.85
22678--22831
66
2.3
65
82
6
168
35
11
17
35
1.86
22681--22878
22
8.9
22
77
11
120
34
10
18
36
1.85
22939--23306
22
16.5
22
66
19
92
40
9
15
34
1.79
23067--23306
22
11.0
22
67
12
111
42
9
13
34
1.76
23190--23337
44
3.4
43
74
11
124
44
8
11
35
1.72
23418--23484
19
3.5
19
85
2
89
43
11
20
23
1.85
23475--23531
22
2.6
22
88
0
87
40
10
12
36
1.77

Tables:   1

The End!