Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008526.1 Corchorus capsularis cultivar CVL-1 contig08547, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1714
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25


Found at i:1225 original size:13 final size:13

Alignment explanation


    Indices: 1209--1235  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       1199 TCTAAAACAG

                         
       1209 ATTAATAAAGCAA
          1 ATTAATAAAGCAA

                         
       1222 ATTAATAAAGCAA
          1 ATTAATAAAGCAA

             
       1235 A
          1 A

       1236 CAATAATTAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22


Consensus pattern (13 bp):   
ATTAATAAAGCAA
Done.