Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008530.1 Corchorus capsularis cultivar CVL-1 contig08551, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28020

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
299--353
2
29.0
2
77
17
55
45
0
3
50
1.19
1820--1861
14
3.1
14
76
13
52
59
0
0
40
0.97
2748--2796
11
4.1
11
80
19
62
55
10
0
34
1.34
2738--2805
26
2.6
26
95
4
120
54
10
0
35
1.35
2744--2835
11
7.1
13
69
26
61
55
8
1
34
1.38
2773--2841
18
3.9
18
66
12
54
55
8
1
34
1.40
2785--2861
39
1.9
41
84
10
106
55
9
1
33
1.39
6122--6362
135
1.8
130
87
4
356
38
10
1
49
1.47
6699--6740
22
1.9
22
85
0
57
16
14
23
45
1.84
9429--10026
197
3.0
197
97
1
1142
35
16
8
39
1.78
13454--13807
169
2.1
167
87
3
505
38
16
15
29
1.89
14179--14227
26
1.9
26
88
12
75
42
0
0
57
0.99
15043--15079
14
2.6
14
91
0
56
70
8
13
8
1.34
15202--15424
75
3.0
75
80
8
256
39
17
23
19
1.92
22064--22112
21
2.3
21
78
0
53
26
28
32
12
1.92
27223--27254
13
2.5
13
89
0
55
21
43
15
18
1.87

Tables:   1

The End!