Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008534.1 Corchorus capsularis cultivar CVL-1 contig08555, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30204

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
943--1005
19
3.2
18
80
12
72
28
4
23
42
1.74
6042--6145
53
2.0
53
96
0
190
23
29
7
39
1.82
8997--9071
16
4.8
16
76
3
80
42
38
10
8
1.69
10094--10181
2
43.5
2
74
15
56
45
4
6
43
1.51
10094--10130
11
3.4
11
92
7
58
45
0
5
48
1.25
16108--16149
21
2.0
20
86
4
57
40
11
21
26
1.88
20080--20105
5
5.2
5
100
0
52
76
0
0
23
0.78
21527--21558
2
16.0
2
100
0
64
50
0
0
50
1.00
25556--25886
43
8.0
43
72
17
220
18
19
6
56
1.62
25720--25791
15
5.0
15
71
6
51
18
22
4
55
1.59
25558--25898
21
16.5
21
70
17
157
18
19
6
55
1.63
25773--25877
22
4.8
22
77
13
101
20
18
6
54
1.66
25985--26025
14
2.9
14
81
3
55
21
19
4
53
1.63
26012--26065
26
2.1
26
93
6
92
27
14
3
53
1.58
26018--26073
26
2.2
26
87
6
78
26
17
3
51
1.62
26044--26105
32
1.9
33
90
3
99
24
17
6
51
1.69
27037--27341
102
3.0
101
83
7
332
37
18
4
40
1.71
27192--27351
51
3.2
50
74
9
180
34
19
5
41
1.73
27146--27357
101
2.1
102
90
0
336
33
19
4
41
1.71
29753--29791
19
2.1
19
85
9
53
17
5
5
71
1.23

Tables:   1

The End!