Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008536.1 Corchorus capsularis cultivar CVL-1 contig08557, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90586

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5838--5870
11
3.0
11
91
8
50
54
3
0
42
1.15
6006--6040
16
2.2
16
89
0
52
11
25
5
57
1.56
16436--16504
29
2.4
29
95
4
122
26
26
7
40
1.81
16584--16626
22
2.0
21
86
4
59
25
9
0
65
1.22
16672--16743
17
4.7
16
81
14
73
30
6
2
59
1.38
16672--16724
27
2.0
27
85
7
72
28
7
3
60
1.41
16785--16877
4
23.5
4
75
6
55
26
6
2
64
1.29
16786--16877
12
7.8
12
72
6
71
27
6
2
64
1.30
16826--16903
24
3.2
23
77
15
68
21
8
2
66
1.32
18426--18456
11
2.8
11
90
0
53
61
0
38
0
0.96
21958--22012
17
3.2
17
77
10
58
27
18
14
40
1.89
40101--40147
24
1.9
25
86
4
69
55
17
10
17
1.69
40482--40509
2
14.0
2
100
0
56
50
0
0
50
1.00
45648--45681
5
6.6
5
86
6
50
82
0
17
0
0.67
45648--45688
17
2.5
17
92
4
66
80
0
19
0
0.71
47119--47175
13
4.3
12
79
16
51
28
1
8
61
1.36
48307--48431
62
2.0
62
98
0
241
28
14
14
42
1.85
49563--49599
17
2.2
17
95
0
65
27
10
35
27
1.90
61009--61137
66
2.0
65
95
1
231
35
21
6
36
1.79
62584--62687
53
2.0
51
85
7
138
32
9
12
45
1.75
62782--62814
12
2.6
13
85
9
50
69
18
0
12
1.18
62768--62820
16
3.3
16
74
10
54
64
15
0
20
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68174--68330
16
9.9
15
66
15
75
12
12
36
38
1.81
68218--68330
32
3.6
32
91
2
183
15
9
36
38
1.81
68479--68597
16
7.4
16
81
3
116
6
14
28
50
1.68
68479--68597
32
3.7
32
80
4
150
6
14
28
50
1.68
68479--68603
48
2.6
46
78
6
133
8
14
28
49
1.71
69893--70048
78
2.0
78
98
0
303
36
10
12
40
1.78
77292--77319
14
2.0
14
100
0
56
50
0
0
50
1.00
77461--77503
20
2.1
21
86
4
61
20
18
20
39
1.93
88648--88727
32
2.5
32
81
2
97
56
21
8
13
1.64
88703--88756
16
3.4
17
70
12
51
59
22
7
11
1.56
88793--88844
17
3.1
16
81
13
61
55
0
1
42
1.10
90225--90586
118
3.0
121
75
19
437
51
3
9
35
1.52

Tables:   1

The End!