Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008540.1 Corchorus capsularis cultivar CVL-1 contig08561, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1725
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32


Found at i:1451 original size:22 final size:22

Alignment explanation


    Indices: 1423--1491  Score: 102
    Period size: 22  Copynumber: 3.1  Consensus size: 22

       1413 CATCTGTACA

                         *        
       1423 TGCCATGTCACCAGGGCTCTCC
          1 TGCCATGTCACCAAGGCTCTCC

                              *   
       1445 TGCCATGTCACCAAGGCTTTCC
          1 TGCCATGTCACCAAGGCTCTCC

                          *   *   
       1467 TGCCATGTCACCAAAGCTTTCC
          1 TGCCATGTCACCAAGGCTCTCC

               
       1489 TGC
          1 TGC

       1492 AAGAGGTCAA


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  22   44  1.00

ACGTcount: A:0.17, C:0.38, G:0.19, T:0.26


Consensus pattern (22 bp):   
TGCCATGTCACCAAGGCTCTCC
Done.