Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008544.1 Corchorus capsularis cultivar CVL-1 contig08565, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95905

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
166--200
2
17.5
2
100
0
70
51
0
0
48
1.00
10181--10414
116
2.0
116
100
0
468
44
6
14
33
1.72
27298--27946
210
3.0
213
80
6
767
33
15
18
33
1.91
28057--28134
33
2.3
35
87
10
110
41
5
17
35
1.72
31920--31957
2
19.0
2
88
0
58
55
0
0
44
0.99
33119--33171
11
5.2
10
78
17
56
39
1
18
39
1.62
33118--33171
19
2.6
21
77
19
60
38
1
18
40
1.61
41020--41049
15
2.0
15
93
0
51
26
13
16
43
1.85
41472--41524
11
5.2
10
78
17
56
39
1
18
39
1.62
41471--41524
19
2.6
21
77
19
60
38
1
18
40
1.61
45527--45564
2
20.0
2
89
10
62
47
0
0
52
1.00
46283--46311
2
14.5
2
100
0
58
51
0
0
48
1.00
48283--48342
11
5.5
11
82
4
59
35
16
3
45
1.64
48283--48398
22
5.3
22
70
12
78
31
19
4
44
1.70
48282--48344
32
2.0
32
87
6
92
33
17
4
44
1.70
53521--53555
18
2.0
17
88
5
52
42
0
5
51
1.25
55824--55884
11
5.7
11
78
7
54
32
18
3
45
1.65
55824--55951
22
5.9
22
69
13
77
29
20
5
44
1.74
55984--56077
38
2.4
38
84
5
118
37
21
5
36
1.76
56014--56077
20
3.3
20
66
24
55
40
18
3
37
1.67
57091--57160
29
2.4
29
85
2
86
35
28
14
21
1.92
69957--70097
72
2.0
72
95
0
255
31
17
10
41
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72256--72310
27
2.0
27
89
6
85
47
9
0
43
1.35
72993--73034
3
14.0
3
100
0
84
33
0
0
66
0.92
73575--73720
52
2.8
53
84
14
221
30
9
2
58
1.42
73824--73853
2
15.0
2
100
0
60
50
0
0
50
1.00
73712--73959
135
1.9
135
95
1
455
35
12
18
34
1.88
74358--74382
2
12.5
2
100
0
50
52
0
0
48
1.00
80666--80699
16
2.2
16
89
5
52
58
8
2
29
1.43
81982--82017
19
1.9
18
88
5
54
33
22
2
41
1.68
83590--83657
34
2.1
34
86
5
95
55
11
2
29
1.50
90881--90918
11
3.5
11
85
0
58
18
42
15
23
1.89
93927--93976
20
2.5
20
96
0
91
34
28
0
38
1.57

Tables:   1

The End!