Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008553.1 Corchorus capsularis cultivar CVL-1 contig08574, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37006

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4908--4941
12
2.8
12
100
0
68
5
14
0
79
0.91
4920--4956
17
2.2
17
90
9
58
5
10
0
83
0.79
4909--4966
10
5.8
10
80
12
66
6
12
0
81
0.88
4908--4970
12
6.1
11
80
19
66
7
12
0
79
0.93
20980--21021
9
4.7
9
90
0
57
35
35
11
16
1.86
22734--22787
28
1.9
28
88
0
81
14
22
9
53
1.69
24319--24460
36
3.9
36
87
2
160
30
21
8
38
1.83
24395--24473
37
2.1
37
95
0
140
29
26
11
32
1.91
24549--24608
18
3.3
18
66
13
50
26
26
3
43
1.70
24454--24757
111
2.8
110
88
4
422
25
26
6
40
1.79
24454--24756
37
8.3
37
85
7
370
26
27
6
40
1.79
24883--25067
41
4.5
41
82
8
234
19
20
12
47
1.81
24901--25059
81
1.9
83
86
5
225
20
20
11
47
1.80
25062--25482
37
11.4
37
96
0
734
26
20
8
44
1.79
27191--27420
43
5.2
44
79
7
200
25
24
24
26
2.00
27193--27423
22
10.5
22
72
6
173
25
24
24
25
2.00
29062--29114
4
14.2
4
81
15
53
1
0
15
83
0.74
29051--29157
11
9.8
10
80
12
106
2
2
13
81
0.92
29060--29157
23
4.2
23
81
17
105
3
3
12
81
0.92
30234--30269
19
1.9
18
88
5
54
41
2
22
33
1.68
31551--31584
16
2.2
16
89
5
52
29
2
8
58
1.43

Tables:   1

The End!