Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008555.1 Corchorus capsularis cultivar CVL-1 contig08576, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62927

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
722--776
18
3.1
18
94
0
101
18
43
5
32
1.73
726--778
9
5.9
9
79
16
65
20
43
3
32
1.70
2516--2759
107
2.3
106
89
2
368
40
8
9
40
1.69
10538--10615
41
1.9
41
86
5
113
42
17
12
26
1.86
10837--10915
41
1.9
42
86
2
115
26
12
15
45
1.82
19870--19917
24
2.0
24
95
0
87
29
27
20
22
1.99
20437--20471
3
12.0
3
87
6
54
0
28
0
71
0.86
22743--22799
28
2.0
28
93
0
96
21
21
17
40
1.92
22750--22807
28
2.1
27
81
6
64
32
22
12
32
1.91
23490--23546
28
2.0
28
89
0
87
43
14
21
21
1.87
27706--27835
30
4.3
30
82
2
127
33
25
23
16
1.96
27706--27823
61
1.9
61
82
0
146
34
25
23
16
1.95
29661--29701
1
41.0
1
95
0
73
97
2
0
0
0.17
34785--34829
16
2.8
16
83
12
65
33
37
22
6
1.80
37329--37369
22
1.9
22
85
5
57
56
2
0
41
1.13
37456--37532
39
2.0
39
81
0
91
37
2
22
37
1.68
38439--38586
74
2.0
74
97
0
278
27
21
14
36
1.93
38584--38661
33
2.4
32
78
2
84
29
16
19
34
1.94
41763--41796
16
2.1
16
100
0
68
47
0
5
47
1.26
45355--45446
46
2.0
46
97
0
175
33
17
20
28
1.95
52897--53007
54
2.1
54
86
6
154
19
27
15
36
1.92
54798--54872
27
2.6
29
79
6
91
16
25
17
41
1.89

Tables:   1

The End!