Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008556.1 Corchorus capsularis cultivar CVL-1 contig08577, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15120

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1681--1724
11
4.0
11
88
8
54
43
0
2
54
1.12
4000--4313
133
2.4
133
91
3
515
38
21
13
27
1.90
4132--4485
178
2.0
178
92
0
591
38
21
12
27
1.90
4265--4350
45
1.9
45
95
0
154
39
19
11
29
1.87
3963--4540
311
1.9
311
91
0
951
39
21
12
27
1.88
4310--4551
133
1.8
133
88
0
376
38
21
11
28
1.89
7147--7187
16
2.6
16
88
7
57
41
36
4
17
1.71
7371--7816
220
2.0
223
96
1
835
52
4
7
35
1.50
9898--9926
6
4.8
6
100
0
58
48
17
17
17
1.82
11739--11763
13
1.9
13
100
0
50
44
0
0
56
0.99
12457--12575
63
1.9
63
94
3
213
37
16
12
32
1.87

Tables:   1

The End!