Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008557.1 Corchorus capsularis cultivar CVL-1 contig08578, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60123

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3964--3989
2
13.0
2
100
0
52
50
0
0
50
1.00
4764--4822
17
3.6
17
68
21
54
54
3
6
35
1.44
7592--7718
61
2.1
61
93
0
218
25
11
25
38
1.88
11603--11654
20
2.6
20
100
0
104
44
21
23
11
1.84
12200--12267
34
2.0
34
94
0
118
41
29
2
26
1.70
13718--13766
24
2.0
24
100
0
98
36
26
8
28
1.85
13716--13779
24
2.8
23
88
9
96
40
25
7
26
1.82
14204--14228
2
12.5
2
100
0
50
52
0
0
48
1.00
15075--15103
15
2.0
15
93
6
51
27
0
3
68
1.05
15754--15806
25
2.2
25
83
10
65
50
7
1
39
1.41
19323--19370
24
2.0
25
83
4
62
16
6
6
70
1.28
24928--24999
33
2.2
33
85
9
94
34
22
15
27
1.94
29173--29206
7
4.9
7
100
0
68
29
11
14
44
1.81
32187--32243
23
2.4
24
72
19
64
33
3
15
47
1.63
32213--32248
18
2.0
18
88
0
54
30
5
13
50
1.65
32731--32828
48
2.0
48
86
0
133
52
15
17
15
1.76
34604--34788
98
1.9
98
88
4
284
32
8
4
54
1.51
34830--36006
332
3.6
331
80
8
1322
32
14
17
35
1.89
36000--36265
132
2.0
134
94
1
464
39
8
15
36
1.79
36757--36805
24
2.0
24
96
0
89
48
14
16
20
1.80
41698--42371
22
29.9
21
67
17
195
36
9
17
36
1.82
44254--44283
15
2.0
15
93
0
51
43
26
10
20
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45640--45678
2
19.5
2
100
0
78
48
0
0
51
1.00
51111--51145
2
17.5
2
100
0
70
48
0
0
51
1.00

Tables:   1

The End!