Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008559.1 Corchorus capsularis cultivar CVL-1 contig08580, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7937

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
949--1036
8
10.9
8
74
11
63
46
6
17
29
1.73
949--1036
16
5.4
16
75
11
81
46
6
17
29
1.73
950--1036
24
3.6
24
77
9
88
45
6
17
29
1.74
949--1036
33
2.7
32
79
11
90
46
6
17
29
1.73
1095--1371
14
19.4
14
67
25
72
44
3
22
29
1.71
1158--1231
22
3.4
22
76
12
64
41
2
24
31
1.69
1279--1332
20
2.6
20
85
11
65
50
5
22
22
1.70
1196--1351
8
20.6
8
67
28
60
44
3
22
29
1.68
1311--1371
6
9.2
6
73
19
50
47
1
19
31
1.59
1291--1366
34
2.2
34
77
11
84
50
2
19
27
1.61
1303--1358
20
2.7
20
88
5
76
44
3
21
30
1.69
1304--1371
34
2.0
34
88
0
100
47
1
20
30
1.59
1589--1945
71
5.1
70
86
6
485
27
18
27
26
1.98
2391--2539
50
3.0
50
93
0
253
38
12
14
34
1.84

Tables:   1

The End!