Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000856.1 Corchorus capsularis cultivar CVL-1 contig00856, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 635

Length: 1059
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.34


Found at i:580 original size:7 final size:7

Alignment explanation


    Indices: 570--595  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

        560 ATTCTATTTA

                   
        570 TATATTG
          1 TATATTG

                   
        577 TATATTG
          1 TATATTG

                   
        584 TATATTG
          1 TATATTG

                 
        591 TATAT
          1 TATAT

        596 ATGAATGGGT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.31, C:0.00, G:0.12, T:0.58


Consensus pattern (7 bp):   
TATATTG
Done.