genome.fa.s8561.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008561.1 Corchorus capsularis cultivar CVL-1 contig08582, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70351

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
848--912	26	2.9	21	75	20	76	30	3	20	46	1.66
3923--3960	2	19.0	2	100	0	76	50	0	0	50	1.00
5668--5952	156	1.8	156	82	4	369	33	21	13	31	1.92
8145--8169	11	2.3	11	100	0	50	76	0	0	24	0.80
11711--11735	9	2.8	9	100	0	50	8	32	12	48	1.69
13207--13241	18	1.9	18	88	0	52	71	0	0	28	0.86
15261--15458	71	2.8	71	84	2	238	52	22	7	18	1.70
25569--25738	92	1.9	91	86	3	243	35	9	13	41	1.77
37842--37985	30	4.8	30	83	3	164	21	9	22	45	1.81
37991--38091	30	3.4	30	80	0	121	24	13	16	44	1.85
40454--40504	7	7.3	7	82	8	68	21	0	37	41	1.54
40672--40725	25	2.1	26	89	6	83	35	18	16	29	1.93
42294--42351	29	2.0	29	96	0	107	29	6	12	51	1.65
43035--43085	21	2.4	21	90	0	75	21	15	25	37	1.93
43108--43135	2	14.0	2	100	0	56	50	0	0	50	1.00
45251--45316	22	3.0	22	68	2	60	4	18	46	30	1.68
46214--46252	12	3.6	12	80	19	50	25	28	15	30	1.96
46318--46362	18	2.5	18	82	7	56	35	15	11	37	1.83
47637--47679	12	3.5	12	93	6	77	25	23	16	34	1.95
58823--58863	2	20.5	2	100	0	82	48	0	0	51	1.00
58790--58829	18	2.2	18	86	0	53	17	5	27	50	1.67
58899--58934	1	36.0	1	88	0	54	94	2	2	0	0.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58932--58962	4	7.8	4	100	0	62	77	22	0	0	0.77
61162--61329	31	5.5	31	72	11	159	32	19	19	29	1.96
61165--61329	60	2.8	60	92	0	258	32	18	18	29	1.95
61360--61491	31	4.3	31	76	14	157	23	20	18	37	1.94
61392--61551	60	2.7	59	89	4	232	26	20	18	35	1.95
61903--61951	22	2.2	22	100	0	98	38	18	14	28	1.90
63328--63368	21	2.0	21	85	0	55	29	26	21	21	1.99

Tables:   1

The End!