Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01008563.1 Corchorus capsularis cultivar CVL-1 contig08584, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3029
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30


Found at i:657 original size:29 final size:30

Alignment explanation


    Indices: 604--665  Score: 108
    Period size: 29  Copynumber: 2.1  Consensus size: 30

        594 TGTCTTCAAG

                                          
        604 TCCATGATAAGTCATTGGCGCATCATTCCC
          1 TCCATGATAAGTCATTGGCGCATCATTCCC

                         *                
        634 TCCATGATAAG-CCTTGGCGCATCATTCCC
          1 TCCATGATAAGTCATTGGCGCATCATTCCC

               
        663 TCC
          1 TCC

        666 CCCTTGAAGA


Statistics
Matches: 31,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
  29   20  0.65
  30   11  0.35

ACGTcount: A:0.21, C:0.34, G:0.16, T:0.29


Consensus pattern (30 bp):   
TCCATGATAAGTCATTGGCGCATCATTCCC
Done.