Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008568.1 Corchorus capsularis cultivar CVL-1 contig08589, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43220

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
549--596
24
2.0
24
100
0
96
33
12
20
33
1.90
6342--6524
91
2.0
91
98
0
357
28
18
18
34
1.94
14989--15434
48
9.3
48
86
3
578
39
21
24
14
1.91
14989--15434
191
2.3
192
84
3
596
39
21
24
14
1.91
15406--15466
30
2.1
30
96
3
115
40
26
13
19
1.88
15365--15511
77
1.9
78
87
1
215
40
23
21
14
1.90
18530--18562
14
2.4
14
90
5
50
42
9
15
33
1.78
20183--20221
3
13.0
3
100
0
78
66
0
0
33
0.92
22099--22172
33
2.2
34
83
7
98
10
28
36
24
1.89
26077--26106
15
2.0
15
93
0
51
70
6
10
13
1.34
26124--26162
6
6.7
6
91
2
62
51
12
2
33
1.54
27496--27554
19
2.9
21
73
21
61
35
18
3
42
1.67
27524--27555
11
2.9
11
90
0
55
43
18
0
37
1.51
27496--27555
22
2.9
22
76
19
65
36
18
3
41
1.67
29408--29442
5
7.0
5
87
12
54
20
0
0
80
0.72
29516--29549
17
2.0
17
94
0
59
23
5
14
55
1.61
30452--30575
33
3.7
33
81
8
135
8
27
41
23
1.82
32711--32745
17
2.0
18
88
5
54
45
34
14
5
1.68
35317--35343
14
1.9
14
100
0
54
51
7
3
37
1.48

Tables:   1

The End!